Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0595 ATGGCGCATATTCTGCTTCATGGCACCCTTCATGTCACCATTTATGAGGTGGATAAGCTTCATACCGGTGCTCGCAATTTCTTAAAATCGTTGGTTGAAAACGTAGAGGAAGCAGTAGGATTTGGCAGAGGAGTAACGAGGCTATATGCAACCATTGATTTAGAAAAGGCCAGAGTTGGAAGAACAAGAAGACTTGAGAAAGAACATTCAAACCCAAAATGGTACGAAACTTTCCACATCTACTGTGCTCACATGGCTTCCAACATCATCTTCACTGTCAAGGACGACAACCCCATTGGAGCAACCTTAATCGGCAGAGCATATTTGTCTGTCCGAGAGATCATCCACGGTGAAGAAGTTGACAAATGGGTTCCAATCTTAGACGAACGCAAGAATCCCATTCGTGGGGAGCCCAAAATTCATGTCAAATTACAATATTTCGATGTCACAAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCCCCAAGTTTCCTGGAGTTCCCTACACTTATTTCTCTCAGAGACGAGGCTGTAAGGTAACTCTGTACCAAGATGCTCATGTTCCTGACAACTTTGTTCCCAAAATCCCTCTTGCTGGGGGCAAGTTTTATGAGCCACATAGATGTTGGGAAGATGTTTTTGATGCAATTACTAATGCTAAACACTTGATTTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTTTGGTGAGGGATAGAAGAAGGCCAAAGCCTGGTGGAGACATAATGCTCGGTGAATTGCTTAAGAGAAAGGCAAGTGAGGGAGTTAGAGTTCTTTTGCTTGTTTGGAATGATACAACTTCTGTGCCGATATTGAAGGAAGAAGGGCTGATGGCAACTCATGATGAAGACACTGCTAAGTACTTTGCTAATACTGATGTGCATTGTGTGTTGTGCCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAGGACATTGCTGTTGGGACAATGTTCACTCATCACCAGAAGATTGTTGTGGTGGACAGTGCTTTGCCTAGTGGGGATCCAAACAGGAGGAGAATTGTGAGTTTTGTTGGTGGGATTGACCTTTGTGATGGTAGGTATGATACTCCATTTCATTCCCTTTTCAGGACTTTGGATTCTGCTCATCATGATGATTTCCATCAGCCAAACTTTGCTGGTACTTCCATAAACAAAGGCGGTCCGAGAGAGCCGTGGCACGATATCCATTCCCGGCTCGAAGGACCGGTTGCGTGGGATGTTTTGTACAACTTTGAGCAGAGATGGAAGAAGCAAGGTGGGAAAGATTTGCTATTGAAACTGAGGGATCTAGATGACATCTTTATCACTCCATCACCTGTGACGTTCCCAGATGACTTTGATAGTTGGAATGTTCAAGTTTTCAGGTCGATCGATGGCGGGGCGGCTTTCGGCTTCCCCGACTCGCCGGAAGAAGCAGCCAAAGCAGGGCTCATAAGTGGAAAGGACAACACTATTGATCGAAGTATTCAAGATGCTTACATCAATGCCATTCGACGAGCAAAGAATTTCATTTACATTGAAAACCAGTATTTCCTTGGAAGCTCGTTTGAATGGAGAGGTGATGATGTGAAGCCTGAGATCATCAATGCCCTGCACCTGATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTCGAGAGCGGTTCACCGTGTACGTTGTCGTCCCGATGTGGCCGGAAGGACTTCCAGAAGGGGGAACAGTTCAAGCAATATTAGATTGGCAAAGAAGAACAATGGAAATGATGTACAAAGATATAGTTCTAGCTCTTAGAGCTAATGGCATAGAAGAGGATCCTAGAAACTATCTGACATTCTTTTGTGTAGGAAATCGCGAAGTTAAAAAGCCTGGAGAATACGAGCCATCAGAATCACCTGAAGAAAATACTGATTACCTTAGGGCCCAGCAAGCCAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATTGTTGACGATGAATACATAATCGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCCATGGGAGCGTACCAGCCATATCATTTGTCAACTCGAGAGCCAGCAAGAGGCCAAGTCCATGGCTTCCGTTTGGCATTATGGTATGAACATTTAGGATTGCTTCATGAATCCTTCCTCATGCCAGAAAGTATTGAGTGTGTTAAAAGAGTAAACAATCTTGCTGAAAAGTATTGGGATCTATACTCAAGTGAGAGCTTTGAACATGACCTTCCCGGCCACTTGCTTCGCTACCCCATCGGCATCACCGGTGACGGTGAAGTTACCGAGCTTCCGGGGTTCGAGTACTTCCCCGATACTAAGGCGCGAGTTCTAGGTAACAAATCTAACTATCTCCCTCCAATCCTCACTACTTGA 2424 44.6 MAHILLHGTLHVTIYEVDKLHTGARNFLKSLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLSVREIIHGEEVDKWVPILDERKNPIRGEPKIHVKLQYFDVTKDQNWGRGIKSPKFPGVPYTYFSQRRGCKVTLYQDAHVPDNFVPKIPLAGGKFYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDRRRPKPGGDIMLGELLKRKASEGVRVLLLVWNDTTSVPILKEEGLMATHDEDTAKYFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPSGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWKKQGGKDLLLKLRDLDDIFITPSPVTFPDDFDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGDDVKPEIINALHLIPKELSLKIVSKIEARERFTVYVVVPMWPEGLPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPEENTDYLRAQQARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTREPARGQVHGFRLALWYEHLGLLHESFLMPESIECVKRVNNLAEKYWDLYSSESFEHDLPGHLLRYPIGITGDGEVTELPGFEYFPDTKARVLGNKSNYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7336357 7344188 - Maker00038998 Lcy12g0595 648658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0595 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824(InterPro)
Lcy12g0595 807 Gene3D Endonuclease Chain A 200 439 - -
Lcy12g0595 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lcy12g0595 807 PANTHER PHOSPHOLIPASE D 5 794 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy12g0595 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Lcy12g0595 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Lcy12g0595 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Lcy12g0595 807 FunFam Phospholipase D 466 699 - -
Lcy12g0595 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Lcy12g0595 807 Gene3D C2 domain 6 156 IPR035892 -
Lcy12g0595 807 FunFam Phospholipase D delta 200 443 - -
Lcy12g0595 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824(InterPro)
Lcy12g0595 807 SMART C2_3c 9 123 IPR000008 -
Lcy12g0595 807 Pfam Phospholipase D Active site motif 326 363 IPR001736 GO:0003824(InterPro)
Lcy12g0595 807 Pfam Phospholipase D Active site motif 655 680 IPR001736 GO:0003824(InterPro)
Lcy12g0595 807 SMART pld_4 325 363 IPR001736 GO:0003824(InterPro)
Lcy12g0595 807 SMART pld_4 653 680 IPR001736 GO:0003824(InterPro)
Lcy12g0595 807 Pfam C2 domain 9 125 IPR000008 -
Lcy12g0595 807 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Lcy12g0595 807 CDD C2_plant_PLD 2 147 - -
Lcy12g0595 807 Gene3D Endonuclease Chain A 475 697 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0595 Lcy-Chr12:7336357 Lcy6g1997 Lcy-Chr6:42548569 5.75E-238 dispersed
Lcy13g0160 Lcy-Chr13:1637034 Lcy12g0595 Lcy-Chr12:7336357 4.64E-205 transposed
Lcy12g0595 Lcy-Chr12:7336357 Lcy3g2047 Lcy-Chr3:47476746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0595 K01115 - csv:101215246 1561.97