Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0596 ATGGCGAAACAAAAGAAATTCAGAGGAGTGAGGCAACGCCGTTGGGGCTCATGGGTCTCTGAAATTCGCCACCCTCTTCTAAAGAGAAGAGTTTGGTTGGGGACGTTCGAAACGGCCGAAGACGCAGCCCGAGCCTACGACGAGGCCGCCATTCTCATGAGTGGTCGAACTGCCAAAACCAACTTTCCCGTCACCGCTACCGTCAGGAGCGAAGCCAGAAATTTTCCTCCATCTTTGAACCCTACCGTCTCAAGTATGGTGTCGTCACCGTTATCGGAAACTCTCAATGCCAAACTTCGCAAGTGTTGCAATTCTCTACCTCGTTCCTTAACTTGCCTCCGTCTCGACACGGAGAGTTGTCGCATCGGCGTCTGGCAGAGGCGTGCAGGACATCGTCGAGTGGCCGACTCGAACTGGGTGATGATGGTGAAGCTTGAGAAGAAGAACGACGACGAATTCCAAGAGACGGAGTCACCGGAAAAGTTCATGGAAGAGGTGAAATTATCAAGTACTGAAGAAAGTTTAGATGATGAAGAAAAGGCTGCTTTACAAATGATTGAAGAACTCTTGAACAAGATATGA 582 49.66 MAKQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAILMSGRTAKTNFPVTATVRSEARNFPPSLNPTVSSMVSSPLSETLNAKLRKCCNSLPRSLTCLRLDTESCRIGVWQRRAGHRRVADSNWVMMVKLEKKNDDEFQETESPEKFMEEVKLSSTEESLDDEEKAALQMIEELLNKI 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7356400 7357457 + Maker00038601 Lcy12g0596 648659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0596 193 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Lcy12g0596 193 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 Coils Coil 168 192 - -
Lcy12g0596 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 152 IPR050913 -
Lcy12g0596 193 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0596 193 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0596 Lcy-Chr12:7356400 Lcy9g1835 Lcy-Chr9:43427351 9.45E-59 dispersed
Lcy9g1874 Lcy-Chr9:43776258 Lcy12g0596 Lcy-Chr12:7356400 5.51E-15 dispersed
Lcy12g0596 Lcy-Chr12:7356400 Lcy2g0734 Lcy-Chr2:6485901 9.43E-55 wgd
Lcy12g0596 Lcy-Chr12:7356400 Lcy4g2105 Lcy-Chr4:47644326 1.60E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19240 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0596 - - - 0.0