Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0614 ATGGAGAATCTCAGGGCTCCATTTAGGGGTATTGTGGATGATATCAGAGGAAGAGCAGCCTGTTATAAGCAAGATTGGGTTGATGGTCGACTTTCAGGAATTGGAATTTTGGCCCCAACTACCTACATTTTTTTCGCTTCTGCACTTCCTGTCATTGCTTTCGGTGAGCAACTGAGCCGAGATACAGATGGAAGCTTGAGCACAGTAGAAACTTTGGCTTCCACAGCCATTTGTGGCATCCTTCATTCAATTCTTGGTGGGCAACCTCTCCTAGTTGTAGGGATTGCAGAACCTACAATTATTATGTATACCTATCTGTACAATTTTTCCAAAGAAAGGAAAGATATAGGGAAAGAGCTCTTCTTAGGTTGGGCAGGATGGGTTTGTGTCTGGACAGCCCTCTTGCTCTTCCTTCTTGCTATATTCAATGCTTCCAGGCTAATCAACAGATTTACAAGGATTGCTGGGGAACTTTTTGGCATGTTAATCTCTGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGTAGTTCCCAAGGCTGAGGATCCAAGTTTAGAGAAGTATCAATTTCATTGGCTTTACACGAATGGATTACTGGGAATTGTATTTACTTTTGGCCTTCTCTATACTGCTTTGAAAAGCAGAAAGGCAAGGTCATGGTTGTATGGCACAGGCTGGCTAAGGAGTTTTATTGCAGACTATGGAGTTCCTCTGATGGTTCTAGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCCTTTGGAGTTCCTAGAAGACTTCAAAGTCCTCTCGCATGGCAATCTACTTCTCTGTTCCATTGGACCGTCATCAAGGACATGGGGAAGATACCTCCTGCATACATCTTTGCGGCCATTATTCCCGCTGTGATGATTGCAGGACTTTATTTTTTTGATCATAGTGTTGCTTCTCAGATGGCACAGCAAAAGGAGTTTAATCTCAAGAACCCTTCTGCCTATCACTATGACATCCTGTTGCTGGGATTTATGACATTGCTTTGCGGGTTGATCGGGCTTCCTCCTTCAAATGGGGTTTTACCACAGTCCCCCATGCACACCAAGTGTCTTGCAACTCTCAGGAGGCGTTTGATGCGAAGGAAGATGGTAGAAAGTGCAAAGGAAAGCATAAAAAGGAAAGCTAGTGATTCTGAAATCTATGGCCACATGCAAGCTGTGTTCTTAGAAATGGAGAGTAGCCCAATTACAACATCAGTAGTCAAAGAGCTGGAAGATTTGAAGGAGGCAGTCATGAAAGGTGAAAGTAAGGATGAAAATTCAAAGGATACATTTGACCCGGAGAGGCATATTGATGCTTATCTTCCTGTCCGAGTGAACGAGCAACGATTGAGCAATCTGCTGCAATCACTTCTGGTGGCAGCATCAGTTTTTGCTTTACCAGCAATAAAGAAGATACCAACATCAGTTCTTTGGGGATACTTTGCCTACATGGCCATTGACAGTCTACCTGGAAACCAATTCTGGGAAAGACTTTTACTGCTCTTCGTAATGCCTAGTCGACGTTACAAGGTTCTAGAAGGCTTTCATGCTTCCTTTGTGGAGTCTGTGCCATTCAAATACATAGCCGCATTCACTATATTTCAATTTGTATATCTCCTCATTTGTTTTGGAGTGACATGGATCCCTATAGCCGGAGTCTTGTTTCCTTTGCCTTTCTTCCTTCTCATCGGCATAAGACATCGCATCCTTCCCAAGCTACTCCAACCTCATTATTTGCAGGAGCTCGACGCAGCTGAGTACGAAGAACTAACCGGTACCCCGGTTCTTTCGCTTGGCCTTTCTATCAAGGAAAAGGATACCACTCAAATAGTTAACAATGAAGATGAAGTTGAAATATGTGATGCTGAAATACTAGATGCGTTGACAACCCATAGAGGGGAGTTGAAGGTTAGAACCAGAAGCTTCAATGACGATCGGCACGGTCAGGTCTATCCTGACCAAGGCAATGGCAAATACTAA 2013 43.42 MENLRAPFRGIVDDIRGRAACYKQDWVDGRLSGIGILAPTTYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGILHSILGGQPLLVVGIAEPTIIMYTYLYNFSKERKDIGKELFLGWAGWVCVWTALLLFLLAIFNASRLINRFTRIAGELFGMLISVLFIQEAIKGVVSEFVVPKAEDPSLEKYQFHWLYTNGLLGIVFTFGLLYTALKSRKARSWLYGTGWLRSFIADYGVPLMVLVWTALSFSVPSKVPFGVPRRLQSPLAWQSTSLFHWTVIKDMGKIPPAYIFAAIIPAVMIAGLYFFDHSVASQMAQQKEFNLKNPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKCLATLRRRLMRRKMVESAKESIKRKASDSEIYGHMQAVFLEMESSPITTSVVKELEDLKEAVMKGESKDENSKDTFDPERHIDAYLPVRVNEQRLSNLLQSLLVAASVFALPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERLLLLFVMPSRRYKVLEGFHASFVESVPFKYIAAFTIFQFVYLLICFGVTWIPIAGVLFPLPFFLLIGIRHRILPKLLQPHYLQELDAAEYEELTGTPVLSLGLSIKEKDTTQIVNNEDEVEICDAEILDALTTHRGELKVRTRSFNDDRHGQVYPDQGNGKY 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7500742 7506699 - Maker00038579 Lcy12g0614 648677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0614 670 Gene3D Helical hairpin bin 18 60 - -
Lcy12g0614 670 PANTHER ANION EXCHANGE PROTEIN 4 641 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Lcy12g0614 670 Pfam HCO3- transporter integral membrane domain 7 181 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy12g0614 670 Pfam HCO3- transporter integral membrane domain 201 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy12g0614 670 Pfam HCO3- transporter integral membrane domain 454 596 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0381 Lcy-Chr12:4628462 Lcy12g0614 Lcy-Chr12:7500742 2.54E-273 transposed
Lcy5g2218 Lcy-Chr5:45181678 Lcy12g0614 Lcy-Chr12:7500742 3.13E-274 transposed
Lcy12g0614 Lcy-Chr12:7500742 Lcy13g1757 Lcy-Chr13:36506590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0614 K24194 - csv:101210964 1186.02