Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0645 ATGGATTTCTGGCCGGAATTTCTCGCCAGCAGCTGGGGAAAAGAGTTCGTCGCCGGCGGAATCGGCGGCGTCGCCGGCGTCGTCTCCGGCTACCCACTCGACACCCTCCGCATTCGACAACAACACTCCACCTCCGGCTCCGCCATCAGCGTCCTCCGCAACATCATGTCCAACGGCGGCCCCGCCGCCCTCTACAGAGGAATGGGCGCTCCACTCGCTTCCGTCACTTTTCAGAACGCCATCGTTTTCCAGACGAACGCCGTGCTCTGCAGGGCATTCGATCCGGCGGCGAGTGAGATCCGTCCGCCGTCGTACAAGGCGGTGGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTGATTCTAACGCCGGTGGAGCTGGTGAAGATCCGTCTTCAATTACAGGATTTGGGAAATTCAAGCCACTCAGATCTGAGCTCGTCTCGGCCCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAGAGGGCTATACAGAGGCTTAACAATCACGATGCTCAGAGACGCTCCTTCTCACTGTTTTTACTTTTGGACTTACGAATTCATGAGAGAGAAGCTTCATCCCGGCTGCAGAAACTCCGGCCAAGAGACGTTGAGAACGATGCTCGTCGCCGGCGGCCTGGCCGGCGTCGCCAGCTGGGTTTGCTGCTACCCACTCGACGTAGTGAAAACCAGACTTCAAGCTCAGTCCAAATTCTCCTTTCAAAAGTACAGTGGAATCATGGATTGTTTCTACAAGAGCGTCAAGGAAGAAGGCTACAGTGTTCTTTGGCGCGGATTGGGAACCGCCATTGCCAGAGCTTTCGTGGTCAATGGCGCCATTTTCTCCGCTTATGAACTCAGCTTGAGATGTCTGTTCAGCAATGGCGGATTTCATGCTGAAAACACGATTTGA 930 55.27 MDFWPEFLASSWGKEFVAGGIGGVAGVVSGYPLDTLRIRQQHSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAASEIRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGNSSHSDLSSSRPGPMQVAKNIFKTEGYRGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRNSGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFSFQKYSGIMDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLFSNGGFHAENTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7960818 7963116 + Maker00024722 Lcy12g0645 648708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0645 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 8 297 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Lcy12g0645 309 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Lcy12g0645 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Lcy12g0645 309 Pfam Mitochondrial carrier protein 11 87 IPR018108 -
Lcy12g0645 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085(InterPro)
Lcy12g0645 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Lcy12g0645 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Lcy12g0645 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085(InterPro)
Lcy12g0645 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Lcy12g0645 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Lcy12g0645 309 Gene3D Mitochondrial carrier domain 9 301 IPR023395 -
Lcy12g0645 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Lcy12g0645 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0645 Lcy-Chr12:7960818 Lcy12g1942 Lcy-Chr12:40775651 2.68E-48 dispersed
Lcy11g1313 Lcy-Chr11:36633564 Lcy12g0645 Lcy-Chr12:7960818 7.47E-08 transposed
Lcy12g0645 Lcy-Chr12:7960818 Lcy3g2112 Lcy-Chr3:48108678 4.90E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0645 K15109 - csv:101222749 582.793