Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0654 | ATGGGCGCCGACATGTCCAACAATCGCCAGCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCTGCTCTCTCTCTCACCCTCGTATCTCTATCTCTGATGAGTTTGCTTTTCGTTTTCGAGGCGGGAATTTTCCGCCGGGGTGAGGTGGCGGAGAAGGGGGATGTCGAGATGGAGGAGGTGGACGACGGCAGCGGAGGAGCGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAACTCGGGGCCGGTGAGGTCGAGATCGGACGACGATTTCGACGGCGGAGGAGTGCATGAGGAAAATGAAGATGGGGATCATGGATGTCATGTAAAGAGAAGGAAGAAATATCACCGGCATACTGCCGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAGTCACCACACCCGGATGAGAAGCAAAGGCAGCAGCTCAGTAAGCGATTGGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAATACATTGCTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAGATTACCAAGAACAAAGCTGGTTGTCCAAACTGTGGCACTGTCGATGCGGGGGAAGACCACGCCACATTGACAACCACAGAACAATTGCGTATTAAGAATGCCAAGCTTAAAGCTGAGGTTGAAAAACTAAGAGCGGCGCTAGGAAAACACCCTCAAGCTGCAGCCTCGCCTTCATACTCATCCGGAAACGACCAAGAGACAAACCGAAGCTGCTTAGATTTTTACACTGGAATTTTCGGGCTTGAGAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTTGAAGAGCTCAAAACAATGGCCGCCGCCGCCGAGCCCCTCTGGGTCCGTAGCGTCGAGACTGGTCGAGAGATTTTAAACTACGACGAGTACTTGAAGACATTCCATCTCAAGAATTCCAACAACTGTTGGCTCAAGAGACACATCGAGGCCTCTCGAGAGACGGCCGTCGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCTACAATTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTCACACCATTGGTGCCCACTAGAGAAATGTATTTCATACGCCATTGTAAGCAGCTCGACGCTGAACAGTGGGCGATCGTCGATGTTTCGATCGAAAACGTTGAAGATAATAATATCGATGCATCGTTGGTGAAATACAGAAAACGTCCTTCTGGTTGCATAATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAGAAACAAAGTTCACAACTTGTACCGCAGCATTGTCAACAATGGCACTGCCTTCGGAGCAAGACATTGGATGGCCACACTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCCACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACATTGGCAGGAAGAAAAAGCACATTAAAATTGGCACAGAGAATGACTTCAAGCTTCTCCCAAGCAGTTGCAGCTTCAAGTTACCAAACATGGACCAAAGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTAAGTGACCCTGGAGAACCCATTGGAGTTATTTTATGTGCAGTTTCTTCCCTATGGCTGCCAGTTTCTCCTCATGTTCTCTTCGATTTCTTGAGAGACGAAGCTCGCAGACACGAGTGGGATGCTATGTTTGGTGGAGATAAAGCTCAGACGATTGCGAATTTGGCTAAAGGACAGGATCGAGGCAACTCGGTTACCATTCAAACAATTGGATCAAAAGAGAGCAGCAGCAGCAGCATGTGGATCCTTCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTCTACTCCGGAGTAGACGTTTCCGGCATGCAGTCGGTGATGACAGGCTGTGATTCCGGCAGCCTCACAATCCTCCCGTCAGGCTTTTCAATTCTCCCGGACGGCGCTGAGTCAAGACCCCTCCTCATCACTCGCCGGAAAGACCACAAATCCGCCGACACCCACGGCGGCGCTCTGCTGACCGCCGCCGTCCAAATCCTGACCGACGCCTCACCCTCTGCAAAACCCACGGTGGAGTCCGTCGAGTACGTGAAAAGCATCGTTTCATGTACGATCAAAAATATCAGAAGCAGCATGTGCTGTGAGGATGATTGA | 2322 | 49.18 | MGADMSNNRQLAFTKDFFSSPALSLTLVSLSLMSLLFVFEAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDAAEVSSENSGPVRSRSDDDFDGGGVHEENEDGDHGCHVKRRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREITKNKAGCPNCGTVDAGEDHATLTTTEQLRIKNAKLKAEVEKLRAALGKHPQAAASPSYSSGNDQETNRSCLDFYTGIFGLEKSRIMEKVHQALEELKTMAAAAEPLWVRSVETGREILNYDEYLKTFHLKNSNNCWLKRHIEASRETAVVFMEPSRLVQSFMDENQWKEMFPFMISKAATIDVICNGEVANWNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECERNKVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMTSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPVSPHVLFDFLRDEARRHEWDAMFGGDKAQTIANLAKGQDRGNSVTIQTIGSKESSSSSMWILQDSSTNSSESMVVYSGVDVSGMQSVMTGCDSGSLTILPSGFSILPDGAESRPLLITRRKDHKSADTHGGALLTAAVQILTDASPSAKPTVESVEYVKSIVSCTIKNIRSSMCCEDD | 773 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8024194 | 8033013 | - | Maker00024712 | Lcy12g0654 | 648717 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0654 | 773 | FunFam | Homeobox-leucine zipper protein HDG1 | 97 | 185 | - | - | |
Lcy12g0654 | 773 | ProSitePatterns | 'Homeobox' domain signature. | 144 | 167 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy12g0654 | 773 | SMART | HOX_1 | 111 | 173 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0654 | 773 | MobiDBLite | consensus disorder prediction | 55 | 118 | - | - | |
Lcy12g0654 | 773 | SMART | START_1 | 282 | 507 | IPR002913 | GO:0008289(InterPro) | |
Lcy12g0654 | 773 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 282 | 506 | - | - | |
Lcy12g0654 | 773 | SUPERFAMILY | Bet v1-like | 550 | 706 | - | - | |
Lcy12g0654 | 773 | ProSiteProfiles | 'Homeobox' domain profile. | 109 | 169 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0654 | 773 | Pfam | Homeodomain | 112 | 167 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0654 | 773 | CDD | START_ArGLABRA2_like | 277 | 506 | - | - | |
Lcy12g0654 | 773 | CDD | homeodomain | 112 | 167 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0654 | 773 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 101 | 770 | IPR042160 | - | |
Lcy12g0654 | 773 | SUPERFAMILY | Bet v1-like | 275 | 508 | - | - | |
Lcy12g0654 | 773 | MobiDBLite | consensus disorder prediction | 83 | 108 | - | - | |
Lcy12g0654 | 773 | MobiDBLite | consensus disorder prediction | 55 | 75 | - | - | |
Lcy12g0654 | 773 | SUPERFAMILY | Homeodomain-like | 99 | 170 | IPR009057 | - | |
Lcy12g0654 | 773 | Gene3D | - | 98 | 183 | - | - | |
Lcy12g0654 | 773 | ProSiteProfiles | START domain profile. | 273 | 510 | IPR002913 | GO:0008289(InterPro) | |
Lcy12g0654 | 773 | Coils | Coil | 220 | 240 | - | - | |
Lcy12g0654 | 773 | Gene3D | - | 282 | 507 | IPR023393 | - | |
Lcy12g0654 | 773 | Pfam | START domain | 286 | 507 | IPR002913 | GO:0008289(InterPro) | |
Lcy12g0654 | 773 | Coils | Coil | 168 | 198 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1799 | Lcy-Chr11:41782435 | Lcy12g0654 | Lcy-Chr12:8024194 | 9.33E-15 | dispersed | |
Lcy12g0654 | Lcy-Chr12:8024194 | Lcy13g0637 | Lcy-Chr13:8674854 | 1.65E-178 | dispersed | |
Lcy12g0654 | Lcy-Chr12:8024194 | Lcy3g2124 | Lcy-Chr3:48181984 | 2.09E-265 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19242 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0654 | K09338 | - | csv:101221341 | 1265.37 |