Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0654 ATGGGCGCCGACATGTCCAACAATCGCCAGCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCTGCTCTCTCTCTCACCCTCGTATCTCTATCTCTGATGAGTTTGCTTTTCGTTTTCGAGGCGGGAATTTTCCGCCGGGGTGAGGTGGCGGAGAAGGGGGATGTCGAGATGGAGGAGGTGGACGACGGCAGCGGAGGAGCGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAACTCGGGGCCGGTGAGGTCGAGATCGGACGACGATTTCGACGGCGGAGGAGTGCATGAGGAAAATGAAGATGGGGATCATGGATGTCATGTAAAGAGAAGGAAGAAATATCACCGGCATACTGCCGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAGTCACCACACCCGGATGAGAAGCAAAGGCAGCAGCTCAGTAAGCGATTGGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAATACATTGCTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAGATTACCAAGAACAAAGCTGGTTGTCCAAACTGTGGCACTGTCGATGCGGGGGAAGACCACGCCACATTGACAACCACAGAACAATTGCGTATTAAGAATGCCAAGCTTAAAGCTGAGGTTGAAAAACTAAGAGCGGCGCTAGGAAAACACCCTCAAGCTGCAGCCTCGCCTTCATACTCATCCGGAAACGACCAAGAGACAAACCGAAGCTGCTTAGATTTTTACACTGGAATTTTCGGGCTTGAGAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTTGAAGAGCTCAAAACAATGGCCGCCGCCGCCGAGCCCCTCTGGGTCCGTAGCGTCGAGACTGGTCGAGAGATTTTAAACTACGACGAGTACTTGAAGACATTCCATCTCAAGAATTCCAACAACTGTTGGCTCAAGAGACACATCGAGGCCTCTCGAGAGACGGCCGTCGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCTACAATTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTCACACCATTGGTGCCCACTAGAGAAATGTATTTCATACGCCATTGTAAGCAGCTCGACGCTGAACAGTGGGCGATCGTCGATGTTTCGATCGAAAACGTTGAAGATAATAATATCGATGCATCGTTGGTGAAATACAGAAAACGTCCTTCTGGTTGCATAATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAGAAACAAAGTTCACAACTTGTACCGCAGCATTGTCAACAATGGCACTGCCTTCGGAGCAAGACATTGGATGGCCACACTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCCACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACATTGGCAGGAAGAAAAAGCACATTAAAATTGGCACAGAGAATGACTTCAAGCTTCTCCCAAGCAGTTGCAGCTTCAAGTTACCAAACATGGACCAAAGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTAAGTGACCCTGGAGAACCCATTGGAGTTATTTTATGTGCAGTTTCTTCCCTATGGCTGCCAGTTTCTCCTCATGTTCTCTTCGATTTCTTGAGAGACGAAGCTCGCAGACACGAGTGGGATGCTATGTTTGGTGGAGATAAAGCTCAGACGATTGCGAATTTGGCTAAAGGACAGGATCGAGGCAACTCGGTTACCATTCAAACAATTGGATCAAAAGAGAGCAGCAGCAGCAGCATGTGGATCCTTCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTCTACTCCGGAGTAGACGTTTCCGGCATGCAGTCGGTGATGACAGGCTGTGATTCCGGCAGCCTCACAATCCTCCCGTCAGGCTTTTCAATTCTCCCGGACGGCGCTGAGTCAAGACCCCTCCTCATCACTCGCCGGAAAGACCACAAATCCGCCGACACCCACGGCGGCGCTCTGCTGACCGCCGCCGTCCAAATCCTGACCGACGCCTCACCCTCTGCAAAACCCACGGTGGAGTCCGTCGAGTACGTGAAAAGCATCGTTTCATGTACGATCAAAAATATCAGAAGCAGCATGTGCTGTGAGGATGATTGA 2322 49.18 MGADMSNNRQLAFTKDFFSSPALSLTLVSLSLMSLLFVFEAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDAAEVSSENSGPVRSRSDDDFDGGGVHEENEDGDHGCHVKRRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREITKNKAGCPNCGTVDAGEDHATLTTTEQLRIKNAKLKAEVEKLRAALGKHPQAAASPSYSSGNDQETNRSCLDFYTGIFGLEKSRIMEKVHQALEELKTMAAAAEPLWVRSVETGREILNYDEYLKTFHLKNSNNCWLKRHIEASRETAVVFMEPSRLVQSFMDENQWKEMFPFMISKAATIDVICNGEVANWNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECERNKVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMTSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPVSPHVLFDFLRDEARRHEWDAMFGGDKAQTIANLAKGQDRGNSVTIQTIGSKESSSSSMWILQDSSTNSSESMVVYSGVDVSGMQSVMTGCDSGSLTILPSGFSILPDGAESRPLLITRRKDHKSADTHGGALLTAAVQILTDASPSAKPTVESVEYVKSIVSCTIKNIRSSMCCEDD 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8024194 8033013 - Maker00024712 Lcy12g0654 648717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0654 773 FunFam Homeobox-leucine zipper protein HDG1 97 185 - -
Lcy12g0654 773 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy12g0654 773 SMART HOX_1 111 173 IPR001356 GO:0003677(InterPro)
Lcy12g0654 773 MobiDBLite consensus disorder prediction 55 118 - -
Lcy12g0654 773 SMART START_1 282 507 IPR002913 GO:0008289(InterPro)
Lcy12g0654 773 FunFam Homeobox-leucine zipper protein GLABRA 2 282 506 - -
Lcy12g0654 773 SUPERFAMILY Bet v1-like 550 706 - -
Lcy12g0654 773 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677(InterPro)
Lcy12g0654 773 Pfam Homeodomain 112 167 IPR001356 GO:0003677(InterPro)
Lcy12g0654 773 CDD START_ArGLABRA2_like 277 506 - -
Lcy12g0654 773 CDD homeodomain 112 167 IPR001356 GO:0003677(InterPro)
Lcy12g0654 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 770 IPR042160 -
Lcy12g0654 773 SUPERFAMILY Bet v1-like 275 508 - -
Lcy12g0654 773 MobiDBLite consensus disorder prediction 83 108 - -
Lcy12g0654 773 MobiDBLite consensus disorder prediction 55 75 - -
Lcy12g0654 773 SUPERFAMILY Homeodomain-like 99 170 IPR009057 -
Lcy12g0654 773 Gene3D - 98 183 - -
Lcy12g0654 773 ProSiteProfiles START domain profile. 273 510 IPR002913 GO:0008289(InterPro)
Lcy12g0654 773 Coils Coil 220 240 - -
Lcy12g0654 773 Gene3D - 282 507 IPR023393 -
Lcy12g0654 773 Pfam START domain 286 507 IPR002913 GO:0008289(InterPro)
Lcy12g0654 773 Coils Coil 168 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1799 Lcy-Chr11:41782435 Lcy12g0654 Lcy-Chr12:8024194 9.33E-15 dispersed
Lcy12g0654 Lcy-Chr12:8024194 Lcy13g0637 Lcy-Chr13:8674854 1.65E-178 dispersed
Lcy12g0654 Lcy-Chr12:8024194 Lcy3g2124 Lcy-Chr3:48181984 2.09E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19242 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0654 K09338 - csv:101221341 1265.37