Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0669 ATGGCGGAACCGAGCAATTCGAATTCAGAATCTGAAAGTACAGAACTCAAAAGGGTAAATCAGAAACACCCGATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTATCGGAGATCCGGCAGCCGAGGAAGAAAACTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCACTCAGCATCAAAGGCGATTCGGCTAAAGCGATTCTCAATTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTGTCGCTAATGCCGAGGGACATTCAGGCGGCGGCGGCCAAGGCGGCGGCGATGGTGGAGTTTAATTCCATGACGGCGTCGTTTTCCTCGTCTTCCAATGATGAAGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAATGAGTTCGAGATGATTGACTCGGTTGATTGGTGGGGGAATCCGCCGTTTGCGGCGGCGGAAATGGATTTCTTTGCGGGGTTTTCTGATCAGAGTACGATTCCGGTCGCCTTCGACGGCGGCGATTGA 585 54.19 MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTASFSSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFFAGFSDQSTIPVAFDGGD 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8285372 8285956 - Maker00024947 Lcy12g0669 648732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0669 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 150 IPR051032 -
Lcy12g0669 194 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 FunFam Ethylene-responsive transcription factor 2 24 85 - -
Lcy12g0669 194 SMART rav1_2 25 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 MobiDBLite consensus disorder prediction 1 23 - -
Lcy12g0669 194 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 ProSiteProfiles AP2/ERF domain profile. 25 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 CDD AP2 24 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0669 194 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0669 Lcy-Chr12:8285372 Lcy3g2138 Lcy-Chr3:48321275 1.41E-57 dispersed
Lcy12g0669 Lcy-Chr12:8285372 Lcy2g0853 Lcy-Chr2:7718615 2.48E-41 wgd
Lcy12g0669 Lcy-Chr12:8285372 Lcy4g2186 Lcy-Chr4:48415335 2.84E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19244 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0669 K09286 - csv:101222354 303.908