Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0675 ATGTTTTGGTCAATGAATCCTGTACGAATTCGCACTTTGTGCTTCCTTCTATACTTTGCCGTTCTTCTTCAAGATCATTCCCTCTGTTCCTCTTATCCCACGCCCTTAAATTGTACGGATACAACCCGTTTATGCACCTCGTTTCTGGCCTTCAAGCCTCAGCCAAATCAGACCCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTCACCGTGGAAGGCAATGGCCGGGACTATGTGTTCATCAGGAAGAACTGTTCCTGTGCCTCTGGATTGAAGAAATACATCACCAACACTACTTTCACCATCAAATCGAATCGTGGTTATGTGTATGATATAGTCATGGAAGCGTACGATGGGCTTGCGCTGTTGCCCAACACGACCCGAATGGCGAGGAATGGAGCTGTTGTGTCTTTGAGGCTGTTTTGTGCCTGTTCAAGCGGGCTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGGGATACCATTGAGTCTTTAGCTAGCCGATTTGGGGTCAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCAGCAATGTCACTGTGGGTGCTTTGTATTATATTCCCTTGAATTCGGTTCCTGGCGATCCTTATCCACTGGAGACAGACGTTTCTCCTGCTCCTACTCCTGCTCCTTCCTATTCTCTGAATAATTTCTCAGATAATGCTGAGAGCCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTATTAGGCATAGTAGGTTATGCTTGCTGTAGGTGGTTGAAATGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCTGGTGGCAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGTTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCAGATTGGAAACAAGCCAGCGCGGAATCTAGCGATAACCAGAGTGCAATTCCAAAAGCCATCGAGAGCAATGTATTCGATGTAGACAAACCTGTGGTTTTCTCATGCGAAGAAATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCAAACCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTCTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAGTCATTTACATGATCCTCTTAACAAGGGTCATACATCACTATCTTGGATTATGAGACTTCAAATTGCTTTGGACGCTGCGAGAGGCCTCGAATACATTCACGAGCATACTAAAACTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATATCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCCACAGTAACCAAAGTTGTCGGTACATACGGTTATTTGGCTCCTGAATATTTGAGTAACGGTCTTGCTACAACCAAAAGTGATGTATATGCTTTCGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCGATTATACGAATTGAGGGCACAACTGTGAAAAATCCTGAAAGACGTTCTCTAGCATCCATTATGTTAGCTGTTCTTCGGAATGCGCCCGATCCTATGAATATGGCAAGTCTGAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTCAAGTTGGCCATGTTAGCAAAGCAGTGTGTGGATGAGGATCCCATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTGTCACAGATCCTACTCTCTTCGGTCGAGTGGGAAGCGACTTTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 2013 43.22 MFWSMNPVRIRTLCFLLYFAVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGRDYVFIRKNCSCASGLKKYITNTTFTIKSNRGYVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPSNVTVGALYYIPLNSVPGDPYPLETDVSPAPTPAPSYSLNNFSDNAESPKRHPPYIWIVGSLGIILVLILLGIVGYACCRWLKCFSRSRSSHSKDPGGKVSHKFHILGKSSFCCASGRYICCSSADWKQASAESSDNQSAIPKAIESNVFDVDKPVVFSCEEIFSSTDGFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKSHLHDPLNKGHTSLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAFGVVLFELISGKEAIIRIEGTTVKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKLAMLAKQCVDEDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8376272 8382254 - Maker00024895 Lcy12g0675 648738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0675 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 659 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Lcy12g0675 670 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0675 670 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0675 670 SMART LysM_2 158 202 IPR018392 -
Lcy12g0675 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0675 670 Gene3D LysM domain 154 207 IPR036779 -
Lcy12g0675 670 Pfam LysM domain 161 196 IPR018392 -
Lcy12g0675 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Lcy12g0675 670 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Lcy12g0675 670 SUPERFAMILY LysM domain 157 202 IPR036779 -
Lcy12g0675 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Lcy12g0675 670 FunFam Kinase family protein 335 431 - -
Lcy12g0675 670 Gene3D Transferase(Phosphotransferase) domain 1 433 657 - -
Lcy12g0675 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Lcy12g0675 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0675 670 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0675 Lcy-Chr12:8376272 Lcy7g0150 Lcy-Chr7:1361085 1.70E-118 dispersed
Lcy7g0644 Lcy-Chr7:5873639 Lcy12g0675 Lcy-Chr12:8376272 2.25E-41 dispersed
Lcy12g0675 Lcy-Chr12:8376272 Lcy2g0819 Lcy-Chr2:7416777 2.61E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65497 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0675 - - - 0.0