Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0682 ATGTCGTGGCAATCTTACATTGACGATCAGTTGATGTATGAGGTCGATGGCAACCATCTCAAAGCCGCTGCTATAATCGGTACCGACGGTGCTGTTTGGGCTCAGAGCCCCGATTTCCCCAAGTTCAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCTCCGACTGGGTTGCACCTTGCTGGATCAAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGCATGTTTCGGCACTTCTGGGATCACTGTAAAGAAAACAACCCAAGCACTCATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAA 405 46.67 MSWQSYIDDQLMYEVDGNHLKAAAIIGTDGAVWAQSPDFPKFKPEEISAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKACFGTSGITVKKTTQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8502907 8504506 - Maker00025071 Lcy12g0682 648745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0682 134 PRINTS Plant profilin signature 107 120 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 120 133 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PANTHER PROFILIN 1 133 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Lcy12g0682 134 SUPERFAMILY Profilin (actin-binding protein) 2 133 IPR036140 -
Lcy12g0682 134 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 103 116 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 116 133 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 CDD PROF 2 133 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 FunFam Profilin 1 134 - -
Lcy12g0682 134 Pfam Profilin 1 134 IPR048278 GO:0003779(InterPro)
Lcy12g0682 134 SMART prof_2 1 134 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 Gene3D Dynein light chain 2a, cytoplasmic 1 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0682 Lcy-Chr12:8502907 Lcy4g2205 Lcy-Chr4:48671109 5.05E-70 dispersed
Lcy12g0682 Lcy-Chr12:8502907 Lcy3g2163 Lcy-Chr3:48534447 4.63E-73 wgd
Lcy12g0682 Lcy-Chr12:8502907 Lcy4g2204 Lcy-Chr4:48666256 9.34E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0682 K05759 - csv:101218089 246.514