Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0682 ATGTCGTGGCAATCTTACATTGACGATCAGTTGATGTATGAGGTCGATGGCAACCATCTCAAAGCCGCTGCTATAATCGGTACCGACGGTGCTGTTTGGGCTCAGAGCCCCGATTTCCCCAAGTTCAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCTCCGACTGGGTTGCACCTTGCTGGATCAAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGCATGTTTCGGCACTTCTGGGATCACTGTAAAGAAAACAACCCAAGCACTCATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAA 405 46.67 MSWQSYIDDQLMYEVDGNHLKAAAIIGTDGAVWAQSPDFPKFKPEEISAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKACFGTSGITVKKTTQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8502907 8504506 - Maker00025071 Lcy12g0682 648745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0682 134 PRINTS Plant profilin signature 107 120 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 120 133 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PANTHER PROFILIN 1 133 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Lcy12g0682 134 SUPERFAMILY Profilin (actin-binding protein) 2 133 IPR036140 -
Lcy12g0682 134 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 103 116 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 PRINTS Profilin signature 116 133 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 CDD PROF 2 133 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 FunFam Profilin 1 134 - -
Lcy12g0682 134 Pfam Profilin 1 134 IPR048278 GO:0003779(InterPro)
Lcy12g0682 134 SMART prof_2 1 134 IPR005455 GO:0003779(InterPro)
Lcy12g0682 134 Gene3D Dynein light chain 2a, cytoplasmic 1 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0682 K05759 - - csv:101218089 246.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0682 Lcy-Chr12:8502907 Lcy4g2205 Lcy-Chr4:48671109 5.05E-70 dispersed
Lcy12g0682 Lcy-Chr12:8502907 Lcy3g2163 Lcy-Chr3:48534447 4.63E-73 wgd
Lcy12g0682 Lcy-Chr12:8502907 Lcy4g2204 Lcy-Chr4:48666256 9.34E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT2G37620 96.3 6.8e-214 740.3
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-212 736.1
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT2G37620 94.7 2.2e-212 735.3
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT2G37620 96.4 1.1e-200 696.4
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT2G37620 95.5 5.6e-200 694.1
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT2G37620 95.8 7.3e-200 693.7
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT2G37620 95.3 2.8e-199 691.8
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT2G37620 86.3 4.6e-194 674.5
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.0e-214 741.1
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 8.9e-214 740.0
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 9.2e-211 729.9
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT5G59370 96.1 7.3e-200 693.7
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT5G59370 96.1 1.1e-198 689.9
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT5G59370 94.4 7.5e-197 683.7
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT5G59370 94.7 9.9e-197 683.3
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT5G59370 86.8 3.0e-193 671.8
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 1.8e-214 742.3
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 2.6e-213 738.4
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 4.1e-211 731.1
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT3G46520 96.4 3.3e-200 694.9
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT3G46520 96.4 4.7e-199 691.0
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT3G46520 94.7 3.4e-197 684.9
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT3G46520 94.9 4.4e-197 684.5
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT3G46520 86.6 8.6e-193 670.2
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 4.7e-215 744.2
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.8
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT3G12110 95.0 2.9e-212 734.9
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT3G12110 96.1 1.1e-200 696.4
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT3G12110 96.1 5.6e-200 694.1
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT3G12110 95.5 2.1e-199 692.2
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT3G12110 95.8 2.8e-199 691.8
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT3G12110 86.8 1.6e-194 676.0
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT3G18780 92.6 6.6e-209 723.8
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT3G18780 92.1 1.2e-207 719.5
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 1.6e-207 719.2
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT3G18780 93.3 4.9e-196 681.0
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT3G18780 93.5 6.4e-196 680.6
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT3G18780 92.5 1.1e-195 679.9
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT3G18780 92.7 2.4e-195 678.7
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT3G18780 82.5 6.4e-188 654.1
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT1G49240 92.9 2.3e-209 725.3
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT1G49240 92.3 4.3e-208 721.1
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT1G49240 92.1 5.6e-208 720.7
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT1G49240 93.6 1.7e-196 682.6
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT1G49240 93.8 2.2e-196 682.2
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT1G49240 92.8 3.7e-196 681.4
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT1G49240 92.4 5.4e-195 677.6
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT1G49240 82.8 2.2e-188 655.6
Lcy4g0291 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 3.0e-214 741.5
Lcy5g0597 . 1 378 Cytoskeleton Gene Families AT5G09810 96.0 5.8e-213 737.3
Lcy10g1858 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Lcy8g0203 . 1 357 Cytoskeleton Gene Families AT5G09810 98.3 3.2e-203 704.9
Lcy1g1128 . 14 369 Cytoskeleton Gene Families AT5G09810 98.6 4.1e-203 704.5
Lcy1g1441 . 1 357 Cytoskeleton Gene Families AT5G09810 96.4 4.3e-200 694.5
Lcy7g0882 . 1 359 Cytoskeleton Gene Families AT5G09810 95.5 1.2e-199 693.0
Lcy8g1811 . 1 395 Cytoskeleton Gene Families AT5G09810 86.6 6.0e-194 674.1
Lcy4g2204 . 1 132 Cytoskeleton Gene Families AT2G19760 78.0 1.1e-57 219.9
Lcy3g2163 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 7.7e-56 213.8
Lcy4g2205 . 1 142 Cytoskeleton Gene Families AT2G19760 72.5 1.1e-54 209.9
Lcy12g0682 . 1 135 Cytoskeleton Gene Families AT2G19760 70.4 1.5e-51 199.5
Lcy9g1637 . 1 154 Cytoskeleton Gene Families AT2G19760 61.0 6.6e-47 184.1
Lcy4g2204 . 1 132 Cytoskeleton Gene Families AT4G29350 78.8 1.8e-57 219.2
Lcy3g2163 . 1 132 Cytoskeleton Gene Families AT4G29350 74.2 2.9e-55 211.8
Lcy4g2205 . 1 142 Cytoskeleton Gene Families AT4G29350 72.5 1.9e-54 209.1
Lcy12g0682 . 1 135 Cytoskeleton Gene Families AT4G29350 70.4 2.6e-51 198.7
Lcy9g1637 . 1 154 Cytoskeleton Gene Families AT4G29350 59.7 1.2e-45 179.9
Lcy4g2205 . 1 142 Cytoskeleton Gene Families AT4G29340 79.7 2.5e-62 235.3
Lcy4g2204 . 1 132 Cytoskeleton Gene Families AT4G29340 74.8 1.9e-57 219.2
Lcy3g2163 . 1 132 Cytoskeleton Gene Families AT4G29340 74.8 5.5e-57 217.6
Lcy12g0682 . 1 135 Cytoskeleton Gene Families AT4G29340 68.1 2.2e-50 195.7
Lcy9g1637 . 1 154 Cytoskeleton Gene Families AT4G29340 61.1 1.5e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112