Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0704 ATGGCCGCTGTCCTCAACTTCCTCCTTTCTCTTCTCTCCCTTTCTCCTCTTCTAGCTTTCGTTTCCACCCAGAATCCTTCAGGCTTCATCAGTTTAGATTGTGGACTCCCAACAGATGCCAAGTATGAAGAACCGAATAGTGGGATAATCTATGAGTCTGATGCAACATTCATAGAAACTGGTACAATACACAACATTTCTTCCGATAGCATCAAAAACCACAACCAACAGGTATGGAGTCTCAGAAGTTTTCCTGAAGGGACCAGAAATTGCTACAAAGTTAGAGTAAAAGCCGACACCAAGTATTTGATTCGAGCTAGCTTTCTATACGGCGACTATGACGGTCGAAAAAAACTCCCTAGCTTCCATCTCCATTTTGGACCCAACTTTTGGACTTCCGTCAATCTCCCTGCAATCGACACGGTGAAGCATTTGGAGATTATACATGTTGTTTCTTCAAATTATGCACAAGTTTGCCTCATTGACACTGGTGTCGGAACTCCATTCATTTCGGCTCTAGAGTTGAGGCCTTTAAACAACTTGTCTTACCCAACAGGGTCACCGCCGATGTCACTAGCCAATTTCTTCCGCTTCGATGTGGGTTCTGTTTACAACCAAACTTACAGATACAAAGATGACGTTTACGATCGCATTTGGGTACCCATGGCTCCACCCCCAGAATGGACTTCTATAACCACACCCAACCCAATAAATGTCAATGACCCATTGTTCTTCAATCCAGCTCCCGCGGTCATGAATTCTGCAGCGACTCCAAAAGACGCCTCTGCTCCATTACAATTCCACTGGATTTCACCAACCAACGCCACACAGTTTTTCGTGTACATGTACTTCACAGAGTTTCTAAAGCTTCAATCGAATCAATCCAGAGTGTTCGACATCATGCTCAATGGGAAAAAGTGGTATTCTAAATCGGTTTCTCCAAATTACTTGGACGAATTTGTTGTTTACAGTACTATACCGTGGACGGGTGGAATGTTCAATTTCTCCATCATCAAAGCCCCCAATTCCACTCTTCCTCCGGTCCTCAACGCCATTGAAGCTTATACGGTCATCAATTTCCCTTTATCGGAGACAAATCAGCAAGATGTTGAGGGCATTTCAAATATCAAGAAAGCGTATGGAGTTGAAAGAAATTGGCAAGGAGATCCTTGTTCCCCTATAGAATTTATTTGGCAAGGACTCGAATGTAGTTTTGTTGACGATTCTGAGCCTCCCAGAATTACATCCTTGAATTTGTCCTCAAGTGGACTCACAGGGAAAATAGCTAAAGACATAGCATATCTTACAATGCTAGAAACTCTGGATTTATCAAACAATAATTTAAGTGGAACCGTACCTGAGTTTCTTGGTCAATTGCCATCATTGACGGTCTTAAATTTAGAAAGAAACGAACTTTCAGGACTTATTCCTACCCAACTCGTTGAAAAGTTCAATGATGGTAGTTTAAACTTAAGGTTTGGTGAAAATCCAAACTTGTTCATCACAACTCCGAATGAAAAAGGAAAACACAACATAGTTGTTCCTGTACTAGCATCCGTTTGTGGATTTGTTCTGCTTTTGGTCTTGATTTTAGGTGTTATCTTTTGGATCAAAACTAAACAAAGAAAACAACAAGGTGGTGTTGAGATTAGAAGAACAAAACAAAATGTCGACCAGTCTCAACAATGGGGTGCAACCAAAAAATGCTATTCTTACTCTGATATCTTGAGAATGACAAACAATTTTGAGCGACCTCTCGGAGAAGGTGGCTTCGGAAGAGTTTACTATGGCCAAATTGACGACACTGAAGTAGCTGTGAAGATGCTTTCTCCTCAATCAGCTCAAGGCTATCAACAATTTCAAACAGAGGTTGACCTTCTCATGAGGGTTCATCACAAAAACTTGACTGAACTTGTTGGATATTGTAATGAATCAACCAATAAAGGACTAATCTATGAATACATGGGAAGAGGGAACTTAGAATCTCTTATCTCAGGTGCACGATCAGGGAAGGTTTTGAATTGGAAAGATAGGCTTCTTATAGCAATGGATGCAGCACATGGATTGGAGTATCTTCACCACGGTATCAAACCGGCTATAATACATAGAGATGTGAAGTCTACAAACATCTTATTAGACACAAATTTTCGAGCAAAAGTGTCCGATTTTGGGTTATCGAGAATTTTTCCTATAGAAGGTGACACCACTCATGTGACAGCCACTAATGTAGTCGGTACTCACGGCTACATTGACCCAGAGTACCACTTGTCGTTTAGATTAAATGAGAAAAGTGACGTTTATGGATTCGGAGTTATCCTTCTTGAAATCATAACTGGAAAACCAGCTTTGATAAAAACTAAAGACCAAGTAACTCATGTCTATCAATGGGTCAAGCCCTTGCTTTCTCAAGGTGATATTCAATCTATCATCGACCCACAAATAGAAGAAGATTTGGATGTGAACTCTATCTGGAAAGCAGTTGACTTAGCAATGTGTTGTGCATCTTCAAAATCAATAGATAGGCCCAACATGAGTCAAGTTCTAATCGAGTTGAAAGAATGTTTGGCCATGGAATTGGCACGTCATAATCATAGTCAATCTGGATTTGTTGTTGCAGATTCCAGCATTATATTTGGACCATCGGCAAGGTAG 2652 40.72 MAAVLNFLLSLLSLSPLLAFVSTQNPSGFISLDCGLPTDAKYEEPNSGIIYESDATFIETGTIHNISSDSIKNHNQQVWSLRSFPEGTRNCYKVRVKADTKYLIRASFLYGDYDGRKKLPSFHLHFGPNFWTSVNLPAIDTVKHLEIIHVVSSNYAQVCLIDTGVGTPFISALELRPLNNLSYPTGSPPMSLANFFRFDVGSVYNQTYRYKDDVYDRIWVPMAPPPEWTSITTPNPINVNDPLFFNPAPAVMNSAATPKDASAPLQFHWISPTNATQFFVYMYFTEFLKLQSNQSRVFDIMLNGKKWYSKSVSPNYLDEFVVYSTIPWTGGMFNFSIIKAPNSTLPPVLNAIEAYTVINFPLSETNQQDVEGISNIKKAYGVERNWQGDPCSPIEFIWQGLECSFVDDSEPPRITSLNLSSSGLTGKIAKDIAYLTMLETLDLSNNNLSGTVPEFLGQLPSLTVLNLERNELSGLIPTQLVEKFNDGSLNLRFGENPNLFITTPNEKGKHNIVVPVLASVCGFVLLLVLILGVIFWIKTKQRKQQGGVEIRRTKQNVDQSQQWGATKKCYSYSDILRMTNNFERPLGEGGFGRVYYGQIDDTEVAVKMLSPQSAQGYQQFQTEVDLLMRVHHKNLTELVGYCNESTNKGLIYEYMGRGNLESLISGARSGKVLNWKDRLLIAMDAAHGLEYLHHGIKPAIIHRDVKSTNILLDTNFRAKVSDFGLSRIFPIEGDTTHVTATNVVGTHGYIDPEYHLSFRLNEKSDVYGFGVILLEIITGKPALIKTKDQVTHVYQWVKPLLSQGDIQSIIDPQIEEDLDVNSIWKAVDLAMCCASSKSIDRPNMSQVLIELKECLAMELARHNHSQSGFVVADSSIIFGPSAR 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8870806 8877644 + Maker00024974 Lcy12g0704 648767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0704 883 PRINTS Leucine-rich repeat signature 459 472 - -
Lcy12g0704 883 PRINTS Leucine-rich repeat signature 438 451 - -
Lcy12g0704 883 SUPERFAMILY L domain-like 397 481 - -
Lcy12g0704 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0704 883 FunFam Leucine-rich repeat receptor-like kinase 368 501 - -
Lcy12g0704 883 Gene3D Phosphorylase Kinase; domain 1 551 654 - -
Lcy12g0704 883 Gene3D Transferase(Phosphotransferase) domain 1 655 874 - -
Lcy12g0704 883 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 655 864 - -
Lcy12g0704 883 SUPERFAMILY Protein kinase-like (PK-like) 560 851 IPR011009 -
Lcy12g0704 883 ProSiteProfiles Protein kinase domain profile. 580 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0704 883 PANTHER OS07G0107800 PROTEIN-RELATED 23 859 - -
Lcy12g0704 883 Pfam Malectin-like domain 32 357 IPR024788 -
Lcy12g0704 883 CDD STKc_IRAK 586 853 - -
Lcy12g0704 883 Pfam Leucine rich repeat 412 472 IPR001611 GO:0005515(InterPro)
Lcy12g0704 883 SMART serkin_6 580 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0704 883 FunFam Leucine-rich repeat receptor-like protein kinase 554 654 - -
Lcy12g0704 883 Gene3D Ribonuclease Inhibitor 371 490 IPR032675 -
Lcy12g0704 883 ProSitePatterns Protein kinases ATP-binding region signature. 586 607 IPR017441 GO:0005524(InterPro)
Lcy12g0704 883 Pfam Protein tyrosine and serine/threonine kinase 582 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0698 Lcy-Chr12:8761580 Lcy12g0704 Lcy-Chr12:8870806 3.61E-89 dispersed
Lcy12g0699 Lcy-Chr12:8764685 Lcy12g0704 Lcy-Chr12:8870806 4.35E-292 dispersed
Lcy12g0704 Lcy-Chr12:8870806 Lcy12g0708 Lcy-Chr12:8924534 0 dispersed
Lcy7g0790 Lcy-Chr7:7635222 Lcy12g0704 Lcy-Chr12:8870806 8.92E-23 dispersed
Lcy12g0702 Lcy-Chr12:8813985 Lcy12g0704 Lcy-Chr12:8870806 0 proximal
Lcy12g0704 Lcy-Chr12:8870806 Lcy12g0706 Lcy-Chr12:8900736 2.49E-39 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65503 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0704 - - - 0.0