Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0708 ATGAGGCCTTTTGGGTGGAACCAAAAGCAAAGCCATGAGGGCTTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATCTGTGTCGTGTCCTCGTCCTTAACACTCTTCTCTCCCTTTCTGCTCTTCTATGTTTCGTCTCCACCCAGAATCCTTCAGGCTTCATCAGTTTAGATTGTGGACTTCCACCGGATGCCAAGTATGAAGAGCCAAATAGTGGGATAATCTATGACTCTGACGCGACATTCATAGACACTGGCACAATCCACAACATATCTTCTGATAGCATCAAAAACCACAACCAACAGTTATGGAGTCTCAGAAGCTTTCCTCAAGGGACCAGAAATTGCTACAAAGTAAGAGTAAAAGCTGACACCAAGTATTTGATTCGAGCTAGCTTTCTATATGGAAACTATGACGGTCGAAAAAAACTCCCTAGCTTTGATCTCCATTTCGGACCCAACAATTGGACTTCCATCAATCTTGATGCAATCGACATGGTGAAGCATTTGGAGATTATACATGTTGTTTCTTCAAATTATGTAGAAGTTTGCCTCATCAACACTGGTGCTGGAACTCCGTTCATTTCGACTCTTGAGCTAAGGCCTTTAAACAACTTGTCTTACCCAACAGAGTCACCGTCGATGTCACTAGCCAATTTCTTCCGCTTCGATGTGGGTTCTGTTAACAACCAAACTTACAGATACAAAGATGACGTTTACGATCGCATTTGGATGCCCATGGCTCCATTCCCAGAATGGACTTCATTAACCACACCGAACCCAATAAATGTCAATGACCCATGGTTCTTCAATCCAGCTCCGGCAGTCATGAATTCAGCGGTGACTCCAAAGGACGCCTCTGCGCCATTACAATTCCACTGGATTTCACCAACCAACACCACAGAGTTTTTCGTGTACATGTACTTCTCAGAGTTTCAAAAGCTTCAATCCAATGAGTCGAGAGTGTTCGACATCATGCTCAATGGGAAAATTTGGCATAGTAAATCAATTTCTCCAACTTACTTGAACGAATACATCGTTTACAGTACTAAATCGTTGATTGGTGGAATGTTCAATTTCTCCATCGTCAAAACCATCAATTCCACTCTTCCTCCAGTCCTCAATGCCATTGAAGCTTATACGGTCATTCATTTTTTTCTATCTGAGACAAACCAACAAGATGTTGAGGGCATTTCAAATATCAAGAAAGTATATGGAGTTGAAAGAAATTGGCAAGGAGATCCTTGTGCTCCTAGAGAATTTATTTGGCAAGGACTCAAATGTAGCTTTGTCGACGATTCTGAGCCTCCCAGAATTACATCCTTGAATTTATCCTTTAGTGGACTCACAAGGAAAATAGCTGAGGACATAGCAAATCTCACCATGCTAGAAATTCTGGATTTATCCAACAACAACTTAAGTGGAACAGTGCCTGAGTTTCTGGCTCAATTGCCATCATTGAGAGTCTTAAATTTAGAAGGAAATGACCTTTCAGGACTTATTCCTTCTCAACTCATTAAAAACTCTAATGATGGCCTTTTAAACTTAAGCTTCGGTGAGAATCCAAACTTATTCATCACAACTCTGCGTGAAGAAAAGAAACGCAACATAGTTGTTCCTGTACTAGCATCAGTTTGTGGATTTGTTCTGCTTTTGTTCTTGATTTTAGGTGTTATCTTTTGGATCAAGATTAAACAAATAAGACAACAAGGTGCTGAGATTGGAACAACAAAACAAAATGTCGACCAATATCAACAATTGGGTGCAACCAAAAAATGTTATTCTTACTCTGATATATCGAGAATGACAAACAATTTTGAGCGACTTCTCGGAGAAGGTGGCTTTGGAGGAGTTTACTATGGTCAAATCAATAACACTGAAGTAGCTGTGAAGATGCTTTCTCCTCAATCAGCTCAAGGGTATCAACAATTTCAAACAGAGGTTGACATTCTCATGAGGGTTCATCACAAAAATTTGACTGAACTTGTTGGATATTGTAATGAATCAACCAATAAAGGATTAATGTATGAATACATGGAAAGAGGGAACTTGAGATCTCTTATCTCAGGTGGCCGATCAATAAAGGTTTTGAATTGGAAAGATAGGCTTCTTATAGCAATGGATGCAGCACATGGATTGGAGTATCTACACCATGGTATCAAACCGGCTATAATACATAGAGATGTGAAATCTACAAACATCTTATTGGACAATAATTTTCGAGCGAAAGTGTCTGATTTTGGATTATCGAGAATTTTTCCTATGGAAGGTGGCACCACTCATGTGACAGCCACCAATGTAGTCGGTACTCATGGCTACATCGATCCAGAGTACCACTTGTCATGTAAATTAAATGAGAAAAGTGATGTTTATGGATTTGGAGTTATTCTTCTTGAAATCATAACTGGAAAACCAGCTTTGATAAGAACGGAAGACCAAGAAATTCATGTCTGTCAATGGGTTAAGCCATTGCTTTCTCAAGGCGATATTCAATCTATCATCGACCCACTAATAGAAGAAGATTTGGATGTGAACTCTATCTGGAAAGCAGTTGACTTAGCAATGTGTTGTGCATCTTCAAAATCAATAGATAGACCCAATATGAGTCAAGTTTTGATCGAGTTGAAAGAATGTTTGGCTATGGAATTGGCTCGTCATAATCATAGTCAATCTGAATATGTTGTTGCAGATTCCAGCATTATATTTGGACCATTGGCAAGGTAG 2727 39.57 MRPFGWNQKQSHEGLCPKWTISYHCGDLCRVLVLNTLLSLSALLCFVSTQNPSGFISLDCGLPPDAKYEEPNSGIIYDSDATFIDTGTIHNISSDSIKNHNQQLWSLRSFPQGTRNCYKVRVKADTKYLIRASFLYGNYDGRKKLPSFDLHFGPNNWTSINLDAIDMVKHLEIIHVVSSNYVEVCLINTGAGTPFISTLELRPLNNLSYPTESPSMSLANFFRFDVGSVNNQTYRYKDDVYDRIWMPMAPFPEWTSLTTPNPINVNDPWFFNPAPAVMNSAVTPKDASAPLQFHWISPTNTTEFFVYMYFSEFQKLQSNESRVFDIMLNGKIWHSKSISPTYLNEYIVYSTKSLIGGMFNFSIVKTINSTLPPVLNAIEAYTVIHFFLSETNQQDVEGISNIKKVYGVERNWQGDPCAPREFIWQGLKCSFVDDSEPPRITSLNLSFSGLTRKIAEDIANLTMLEILDLSNNNLSGTVPEFLAQLPSLRVLNLEGNDLSGLIPSQLIKNSNDGLLNLSFGENPNLFITTLREEKKRNIVVPVLASVCGFVLLLFLILGVIFWIKIKQIRQQGAEIGTTKQNVDQYQQLGATKKCYSYSDISRMTNNFERLLGEGGFGGVYYGQINNTEVAVKMLSPQSAQGYQQFQTEVDILMRVHHKNLTELVGYCNESTNKGLMYEYMERGNLRSLISGGRSIKVLNWKDRLLIAMDAAHGLEYLHHGIKPAIIHRDVKSTNILLDNNFRAKVSDFGLSRIFPMEGGTTHVTATNVVGTHGYIDPEYHLSCKLNEKSDVYGFGVILLEIITGKPALIRTEDQEIHVCQWVKPLLSQGDIQSIIDPLIEEDLDVNSIWKAVDLAMCCASSKSIDRPNMSQVLIELKECLAMELARHNHSQSEYVVADSSIIFGPLAR 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8924534 8930578 + Maker00025094 Lcy12g0708 648771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0708 908 SUPERFAMILY L domain-like 408 531 - -
Lcy12g0708 908 ProSitePatterns Protein kinases ATP-binding region signature. 611 632 IPR017441 GO:0005524(InterPro)
Lcy12g0708 908 Pfam Leucine rich repeat 438 498 IPR001611 GO:0005515(InterPro)
Lcy12g0708 908 FunFam Leucine-rich repeat receptor-like kinase 394 527 - -
Lcy12g0708 908 Gene3D Phosphorylase Kinase; domain 1 588 679 - -
Lcy12g0708 908 Pfam Protein tyrosine and serine/threonine kinase 607 815 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0708 908 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 680 889 - -
Lcy12g0708 908 ProSiteProfiles Protein kinase domain profile. 605 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0708 908 Gene3D Ribonuclease Inhibitor 397 516 IPR032675 -
Lcy12g0708 908 Gene3D Transferase(Phosphotransferase) domain 1 680 901 - -
Lcy12g0708 908 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0708 908 Pfam Malectin-like domain 58 383 IPR024788 -
Lcy12g0708 908 CDD STKc_IRAK 611 878 - -
Lcy12g0708 908 PRINTS Leucine-rich repeat signature 485 498 - -
Lcy12g0708 908 PRINTS Leucine-rich repeat signature 464 477 - -
Lcy12g0708 908 SUPERFAMILY Protein kinase-like (PK-like) 587 876 IPR011009 -
Lcy12g0708 908 PANTHER OS07G0107800 PROTEIN-RELATED 48 884 - -
Lcy12g0708 908 SMART serkin_6 605 850 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0708 908 FunFam Leucine-rich repeat receptor-like protein kinase 579 679 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0702 Lcy-Chr12:8813985 Lcy12g0708 Lcy-Chr12:8924534 0 dispersed
Lcy12g0704 Lcy-Chr12:8870806 Lcy12g0708 Lcy-Chr12:8924534 0 dispersed
Lcy12g0708 Lcy-Chr12:8924534 Lcy12g0715 Lcy-Chr12:9034400 0 dispersed
Lcy12g0706 Lcy-Chr12:8900736 Lcy12g0708 Lcy-Chr12:8924534 5.37E-40 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65504 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0708 - - - 0.0