Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0711 ATGGGTGCTAGGTATGAAGAGTCGAATAGTGGCATAATCTATGACTCTGACGCGACATTTATAGACGCTGGCACAATCCACAACATATCGTCTGATAGTATCAAAAACCATAGTCAGCAACTATGGAGTCTTAGAAGCTTTCCCCAAGGGACCAGAAATTGTTACAATGTTAGAGCAAAAGCTGACACCAAGTATTTGATTCGAGCTAGCTTTCTATATGGTGACTATGACGATAAAAAAAAGCTCCCTAGCTTTGATCTCCATTTCGGACCCAACTTTTGGACTTCCGTCAATCTTGATGCAATTGACATGGTGAAGCATTTTGAGATTATACATATTGTTTCTTCAAATTATATAGATGTTTGCCTCATTAACACAGGTGTCGGAACTCCGTTCATTTCGACTCTAGAGCTAAGGCCTCTAAACAACTTGTCTTACCCAATAGGGTCACCCTCGATGGCGCTGGCCAATTTCCTTCGCCTCGATGTGGGTTCTATTAACCACCAAACTTACAGGTACAAAGATGACGTTTACGATCGCATTTGGATGCCCATGGATCTACTTCCTGAGTGGACTTCAACAACCACATCGAATCAAATCGATGTCAATACCTCGATGTTCTTCTTACCAGCTCCGGCAGTCATGAACTCGGCGGCGATCCCAAGAGACGCCTCTGCTCCATTGGAATTCCACTGGATTTCACCAACCAACACCACAGAGTTTTTCGTGTACATGTACTTTTCAGAGTTTCATAAGCTTCAATCCAATGAGTCCAGATCGTTCGACATAATGAGGAATGGTGAAAGTTGGTATAATGAAGTTTCTCCACCTTACTTGGGCCTATTCATCGTTTACAGTACTAAACCGTCGACTGGTGGAATATTCAATTTCTCCATCATCAAAACCCCCAATTCCACTCTTCCTCCACTCCTCAACGCCATTGAAGCTTATACGGTCATCAATTTCCTTCTATCTCAGACAAACCAACAAGATGTTGAGAGCATTTCAAATATCAAGAAAGTTTATGGAGTTGAAAGAAACTGGCAAGGAGATCCCTGTGCCCCTACAAAATTTATTTGGCAAGGACTCAAATGTAGCTTTGTGGATTCTGAACCTCCCAGAATTACTTCCTTGGATTTATCCTCCAGTGGACTCACAGGAAGAATAGCTAGAGACATAGCAAATCTCACCTCACTAGAAACTCTGGATTTATCAAACAATAACTTAAGTGGACCAGTGCCTGAGTTTCTTGCTCAATTGCCATCACTGAAGGTCCTAAATTTGGAAAGAAACGACCTTTCAGGACTTGTTCCTTCTCAACTCATTAAAAATTCTAATGATGGCCTTTTAAACTTAAGCTTCGGTCAGAATCCTAACTTGTTCATCACAACTCCGAGTGAAGAAAAGAAACGAAACATAGTTGTTCCTGTACTAGCATCAGTTTGTGGATTTGTGCTGCTTTTGTTCTTGATTTTAGGTGTTATCTTTTGGATCAAGACCGAACAAAGAAAACAAGGTGTTGAGATTGGAAGAACAAAACAAAATGTCGACCAGTCTGAAGAATGGGGTGCAACCAAAAAATGCTATTCTTATTCTGATATCTTAAAAATGACAAACAATTTTGAGCGACTTCTCGGAGAAGGTGGCTTTGGAAGAGTTTACTATGGTCAAATCAATAACACTGAAGTAGCTGTTAAGATGCTTTCTCCTCAATCAGCCCAAGGATATCAACAATTTCAGACAGAGGTTGACCTTCTCATGAGGGTTCATCACAAAAACTTGACTGAACTTGTTGGATATTGTAATGAATCAACCAATAAAGGACTAATCTATGAATACATGGGCAGAGGGAACTTGGAATCTCTTATCTCAGGTGCACGATCAGGGAAGGTTTTGAATTGGAAAGATAGGCTTCTTATAGCAATGGATGCAGCACATGGCTTGGAGTACCTTCACCATGGTATCAAACCAGCTATAATACATAGAGATGTAAAATCTACAAACATCTTATTGGACAACAATTTTCGAGCAAAAGTGTCTGATTTTGGATTATCGAGAATTTTTCCTATAGAAGGTGGTACCACTCATGTGACAGCCACTAATGTAGTTGGTACTCATGGCTACATTGATCCAGAGTACCACTTGTCGTTTAGATTAAATGAAAAAAGTGACGTTTATGGATTCGGAGTTATTCTTCTCGAAATCATCACTGGAAAGTCAGCTTTGATAAAAACTAAAGACCAAGTAACTCATGTCTATCAATGGGTTAAACCCTTGCTTTCTCAAGGTGATATTCAATCTATCATTGACCCACAAATAGAAGAAGAATTAGATGTGAACTCCATCTGGAAAGCAGTTGACTTAGCAATGTGTTGTGCATCTTCAACATCAATAAATAGGCCCAACATGAGTGAAGTTCTGATCGAGTTGAAAGAATGTTTGGCCATGGAATTGGCTCGTCATAATCATAGGCAATCTGAATCTGTTGTTGCAGATTCCAGCATTATATCTGAACCATCGGCAAGGATCAGCGAAGCAGTGGTTCGAAAAGTTGCCAAGGAGATCTATTATTTCTTTCAGAGAATTGGTGTGAACGTTCATCACCAAACTCCTCACTTCAGATGGAAGGATATATGCAACGATGGAGTAGTCCTGATAGCCTTATTAGTAGCAGGATTGAAGGATGAGAGATTGCTTAATTCAATAGCATTAGAAGGGTACGTTCTTGCTGTTGGAATTTTCGGATTCAACGTGGTTTTGTTGGCGAAACGGTCAAGAACAACTTCTAAAGTAAGTATTCTTGATCCCAGTATGGTTAATGATCGTTTCCGCTGCGCTAGGGCTTTAATCCCTGCAATTTCTCTTTAG 2868 40.13 MGARYEESNSGIIYDSDATFIDAGTIHNISSDSIKNHSQQLWSLRSFPQGTRNCYNVRAKADTKYLIRASFLYGDYDDKKKLPSFDLHFGPNFWTSVNLDAIDMVKHFEIIHIVSSNYIDVCLINTGVGTPFISTLELRPLNNLSYPIGSPSMALANFLRLDVGSINHQTYRYKDDVYDRIWMPMDLLPEWTSTTTSNQIDVNTSMFFLPAPAVMNSAAIPRDASAPLEFHWISPTNTTEFFVYMYFSEFHKLQSNESRSFDIMRNGESWYNEVSPPYLGLFIVYSTKPSTGGIFNFSIIKTPNSTLPPLLNAIEAYTVINFLLSQTNQQDVESISNIKKVYGVERNWQGDPCAPTKFIWQGLKCSFVDSEPPRITSLDLSSSGLTGRIARDIANLTSLETLDLSNNNLSGPVPEFLAQLPSLKVLNLERNDLSGLVPSQLIKNSNDGLLNLSFGQNPNLFITTPSEEKKRNIVVPVLASVCGFVLLLFLILGVIFWIKTEQRKQGVEIGRTKQNVDQSEEWGATKKCYSYSDILKMTNNFERLLGEGGFGRVYYGQINNTEVAVKMLSPQSAQGYQQFQTEVDLLMRVHHKNLTELVGYCNESTNKGLIYEYMGRGNLESLISGARSGKVLNWKDRLLIAMDAAHGLEYLHHGIKPAIIHRDVKSTNILLDNNFRAKVSDFGLSRIFPIEGGTTHVTATNVVGTHGYIDPEYHLSFRLNEKSDVYGFGVILLEIITGKSALIKTKDQVTHVYQWVKPLLSQGDIQSIIDPQIEEELDVNSIWKAVDLAMCCASSTSINRPNMSEVLIELKECLAMELARHNHRQSESVVADSSIISEPSARISEAVVRKVAKEIYYFFQRIGVNVHHQTPHFRWKDICNDGVVLIALLVAGLKDERLLNSIALEGYVLAVGIFGFNVVLLAKRSRTTSKVSILDPSMVNDRFRCARALIPAISL 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8970918 8986244 + Maker00025028 Lcy12g0711 648774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0711 955 Pfam Protein tyrosine and serine/threonine kinase 541 747 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0711 955 Gene3D Transferase(Phosphotransferase) domain 1 614 837 - -
Lcy12g0711 955 PANTHER OS07G0107800 PROTEIN-RELATED 5 820 - -
Lcy12g0711 955 FunFam Leucine-rich repeat receptor-like kinase 330 462 - -
Lcy12g0711 955 SUPERFAMILY Protein kinase-like (PK-like) 519 810 IPR011009 -
Lcy12g0711 955 FunFam Leucine-rich repeat receptor-like protein kinase 513 613 - -
Lcy12g0711 955 Gene3D Phosphorylase Kinase; domain 1 511 613 - -
Lcy12g0711 955 PRINTS Leucine-rich repeat signature 420 433 - -
Lcy12g0711 955 PRINTS Leucine-rich repeat signature 399 412 - -
Lcy12g0711 955 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 614 823 - -
Lcy12g0711 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0711 955 Pfam Malectin-like domain 4 319 IPR024788 -
Lcy12g0711 955 ProSiteProfiles Protein kinase domain profile. 539 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0711 955 SUPERFAMILY L domain-like 359 460 - -
Lcy12g0711 955 SMART serkin_6 539 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0711 955 Pfam Leucine rich repeat 373 433 IPR001611 GO:0005515(InterPro)
Lcy12g0711 955 ProSitePatterns Protein kinases ATP-binding region signature. 545 566 IPR017441 GO:0005524(InterPro)
Lcy12g0711 955 Gene3D Ribonuclease Inhibitor 332 451 IPR032675 -
Lcy12g0711 955 CDD STKc_IRAK 545 812 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0711 Lcy-Chr12:8970918 Lcy12g0715 Lcy-Chr12:9034400 0 dispersed
Lcy12g0711 Lcy-Chr12:8970918 Lcy12g0712 Lcy-Chr12:8993034 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65505 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0711 - - - 0.0