Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0716 ATGGCAACTCTCCGATTCTTCATCCTCGTTCTTCTTTCCACTTTCGCACTCTGCAAATTCGTCTCTGCACAGAATCCTTCAGGTTTCATCAGTATAGACTGCGGAATTCCCGCGAACTCCACCTACACAGATTCGATCACCGGAATAGTCTACGAATCCGATGCGGCGTTCGTAAGTTCCGGCGAAGTCCACAACATTTCGGCCGATAGCATGCAGGAAGGCTTGAAACAGCCGCTGTGGAATTTGAGGAGCTTTCCGGAAGGAATCAGGAATTGCTACAAATTGAAAGTGAGGTTAGGGAAGAAGTATTTGATTCGAGCGGCTTTTATGTACGGGAATTACGATGGTCGAAGGGATTTGCCTGAATTTGATCTGTATTTTGGAGCGAACCTGTGGGCTAGGATTGCGTTTTCGGACGATTCTCCGATGAGTAAGGAGATTTTGCATATCGTTTCGTCGAGTGAAGTACAAATCTGCGTTGTGAATGTTGGAACTGGAATTCCGTTCATTTCGGTTCTGGAATTGAGGCCTCTGGAAGACCGTGCTTACGAGACGGGATCTCTGACGTTGGCTACTTTCTCACGCGAAGATTTGGGCTCTAACAGGAATCAAGTTATCAGGTATAAAGAGGACGCCTACGATCGAATCTGGGGTCCAACGGTCCCGACCCAAGGAATGACTACCATAAACACTTCGGAGCAAGTTTCCGTCGACGACCCGCTCTTCTTCCAGCCGGCTCCGGCGGTCATGAACACGGCGGAGACGCCGATCAACGCAAGCGATACGCTGGGTTACTTTTGGCTGCCGACGGATCCCACGGCGGCATATTTCCTCTACTTGTACTTTGCGGAGCTGAAGGTGCTTCAAGCGAACGAGTCCAGAGAGTTCGACGTATTACTGAATGGAAAACGGTGGCATAATGAATCGATTTCTCCCGGATATTTATCCGAAATGGTCTTGTTCAGTACCTCACCTATGACTGGCGGAACCTACGAGATCACCCTCGTCAAAACTGCCAATTCAACCCTTCCTCCGATCCTCAATGCTGTTGAGGTTTATGAAGTTGTCAATTTCTCGCAATCCGAGACCAGTGGACAAGATGTTGTCGCAATTGAAAATATCAAGACAATTTATGGAGTTAGAAGAAACTGGCAGGGAGATCCCTGTGCCCCAAGGAGATTCATTTGGCAAGGAGTCAACTGCAGCTTTGTGGATTCTGAGCCTCCCAGAATCATATCCTTGGATTTGAACTCCAGTGGACTCACAGGAGAAATACCTCGAGATATCGGAAATCTTAAAATGCTGGAGATTCTAGATCTATCAAACAATAATTTGACCGGACCGGTGCCTGAATTTCTCGCTCAATTGCCATCCTTGCGAGTCCTAAACTTGGAAAAAAACAAGCTTTCAGGACTAATACCAGCCCAGCTCGTAGAGAAGTCCAATAATGGCTCTCTGTTATTAAGCGGCTATCTTTTGGAGGACAAAAAGAAGAAAATCGAAAGTGCTATCAATTCAGGAGCTGTAATTGGAGTGGCGAAACAAACTGTTGATAATTCTCAAAATTTGGACACGGCTAAGAGATGCTATTCATACTCGGATGTTCTAAGAATGACAAACAATTTCGAGCACGTGCTTGGAGAAGGTGGCTTTGGACGAGTTTACTACGGCAAAGTCGAGAATGTTGAAGTAGCTGTAAAAATGCTATCTCCTCGTTCAGTTCAAGGATATCAACAATTTCAAGCAGAGGTTGACCTTCTTATGAGGGTTCATCATAGAAACTTAACTGGTCTTGTCGGGTATTGCAATGAACCGACCAACAAAGGACTTATCTATGAGTACATGGGCAGAGGAAACTTGGGATCTCTCATCTCAGATGGCAAGTCAGCTTTGTTGAACTGGAAAGACAGACTTCATATAGCAGTGGATGCAGCACAAGGATTGCAATACTTGCATTCTGGTATAAAGCCAGCTATTGTACATAGAGACGTAAAATCTTCCAACATCTTGTTGGATGACAACTTCCGAGCAAAAGTATCTGATTTTGGCTTGTCGAGAATTTTTCCCGTCGACAATGGTGCCACTCATGTGACAACGAATGTGGTTGGCACTCCTGGTTACCTCGACCCCGAATACTACACATCCTATAGATTAAATGAGAAAAGTGATGTTTATGGCTTCGGAATTGTTCTTCTAGAAATCATAACTGGAAGACCAGTTTTGACAAAGTCTGTAGACAAGGTAACTCACATCTATCAATGGGTTAACTCGATGCTTTCTCAAGGTGATATCAACTCCATTATTGATCCGAAATTGAAAAAAGATTTTGATGTTAACACCATTTGGAAAGCGGTCGAAATAGCGATGTCATGTGCATCTCCCGCTTCTACAAACAGGCCAACCATGAGCCAAGTTGTGATAGATTTGAATGAATGTTTGAATGCTCACAATAATAACTATCTTCAACCTGAATCAGTAGTTGAAGATCAGATTTCTCTGTTTGGTCCAGAAGCAAGGTAG 2520 44.48 MATLRFFILVLLSTFALCKFVSAQNPSGFISIDCGIPANSTYTDSITGIVYESDAAFVSSGEVHNISADSMQEGLKQPLWNLRSFPEGIRNCYKLKVRLGKKYLIRAAFMYGNYDGRRDLPEFDLYFGANLWARIAFSDDSPMSKEILHIVSSSEVQICVVNVGTGIPFISVLELRPLEDRAYETGSLTLATFSREDLGSNRNQVIRYKEDAYDRIWGPTVPTQGMTTINTSEQVSVDDPLFFQPAPAVMNTAETPINASDTLGYFWLPTDPTAAYFLYLYFAELKVLQANESREFDVLLNGKRWHNESISPGYLSEMVLFSTSPMTGGTYEITLVKTANSTLPPILNAVEVYEVVNFSQSETSGQDVVAIENIKTIYGVRRNWQGDPCAPRRFIWQGVNCSFVDSEPPRIISLDLNSSGLTGEIPRDIGNLKMLEILDLSNNNLTGPVPEFLAQLPSLRVLNLEKNKLSGLIPAQLVEKSNNGSLLLSGYLLEDKKKKIESAINSGAVIGVAKQTVDNSQNLDTAKRCYSYSDVLRMTNNFEHVLGEGGFGRVYYGKVENVEVAVKMLSPRSVQGYQQFQAEVDLLMRVHHRNLTGLVGYCNEPTNKGLIYEYMGRGNLGSLISDGKSALLNWKDRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDDNFRAKVSDFGLSRIFPVDNGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYGFGIVLLEIITGRPVLTKSVDKVTHIYQWVNSMLSQGDINSIIDPKLKKDFDVNTIWKAVEIAMSCASPASTNRPTMSQVVIDLNECLNAHNNNYLQPESVVEDQISLFGPEAR 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9065515 9071137 + Maker00024726 Lcy12g0716 648779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0716 839 ProSitePatterns Protein kinases ATP-binding region signature. 546 567 IPR017441 GO:0005524(InterPro)
Lcy12g0716 839 Pfam Malectin-like domain 32 355 IPR024788 -
Lcy12g0716 839 SUPERFAMILY Protein kinase-like (PK-like) 524 809 IPR011009 -
Lcy12g0716 839 ProSiteProfiles Protein kinase domain profile. 540 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0716 839 SMART serkin_6 540 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0716 839 PANTHER OS07G0107800 PROTEIN-RELATED 21 817 - -
Lcy12g0716 839 Gene3D Ribonuclease Inhibitor 370 486 IPR032675 -
Lcy12g0716 839 Gene3D Transferase(Phosphotransferase) domain 1 615 832 - -
Lcy12g0716 839 PRINTS Leucine-rich repeat signature 456 469 - -
Lcy12g0716 839 PRINTS Leucine-rich repeat signature 435 448 - -
Lcy12g0716 839 SUPERFAMILY L domain-like 394 493 - -
Lcy12g0716 839 Pfam Protein tyrosine and serine/threonine kinase 542 808 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0716 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0716 839 Gene3D - 196 356 - -
Lcy12g0716 839 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 615 821 - -
Lcy12g0716 839 FunFam Leucine-rich repeat receptor-like protein kinase 518 614 - -
Lcy12g0716 839 FunFam Leucine-rich repeat receptor-like kinase 354 490 - -
Lcy12g0716 839 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515(InterPro)
Lcy12g0716 839 Gene3D Phosphorylase Kinase; domain 1 512 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0714 Lcy-Chr12:9022490 Lcy12g0716 Lcy-Chr12:9065515 1.18E-189 dispersed
Lcy12g0716 Lcy-Chr12:9065515 Lcy12g0720 Lcy-Chr12:9154724 5.85E-286 dispersed
Lcy12g0715 Lcy-Chr12:9034400 Lcy12g0716 Lcy-Chr12:9065515 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65509 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0716 - - - 0.0