Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0724 ATGGATGATTTGCTTTGGAATGGCTCATGGAGCACCGGCGAAGACGACGGTTCCGAAGAAAGCTTATTCTCCTCGGACGACCCGAGTCGTTGTTCGAGCCCACCATTACAAGAGCTTCAAACAGTTGCAAGAATATTGGGGTTGCCGGAGATCGAAACTCCGGCACCGGCAGTGGAATTGGCTATGGATCCCAAGTCATGGCCGGCGGGAGCTAGCTCCGGTGGAGTTTTGTTGGAAGAGCTTGAAAATGACAAAGGAATTGCACCAGAGGGTGGATCTTGGGACATTTTTGAGAACCAACAACCAAAACAACAAAATCCCATAACACAAAAACAACCAAGCTCAGCCAAAAACAATGATCACTTCCAACACTCTACAACTTCGTCTCCATCACCATCGTCTTCGAACAACGACAAGTCTGAGCCTGTTGTTCGGGAGGTCGTGTCACAAATGAAGGAATTGATATATCACGCGGCGGTGTTTAGGCCGGTGAACTTAGGGTTGGAGACGGTGGAGAAGAAGACGAGGAGGAACGTGAAGACGTCGAAGGAGCCACAAACGGTGGCGGCGAGAAAACGGAGGGAGAAGATAAGTGAAAAAATTAGGGTTTTGCAGAGGTTGGTTCCTGGTGGGAACAAAATGGACACTGCCTCCATGCTCGATGAGGCTGCAAGCTACCTCAAGTTTCTTAGGGCACAAATCAAAGCACTAGAGGGTTTAAGCTACAAAGTTGGCAATGTTGATTGTCTCTCAACTTGCAACTCTTTTTCTTTCAACTCCACTATATTTCCCACAAATAATGCTTATTTTCCTCTCTAA 819 47.37 MDDLLWNGSWSTGEDDGSEESLFSSDDPSRCSSPPLQELQTVARILGLPEIETPAPAVELAMDPKSWPAGASSGGVLLEELENDKGIAPEGGSWDIFENQQPKQQNPITQKQPSSAKNNDHFQHSTTSSPSPSSSNNDKSEPVVREVVSQMKELIYHAAVFRPVNLGLETVEKKTRRNVKTSKEPQTVAARKRREKISEKIRVLQRLVPGGNKMDTASMLDEAASYLKFLRAQIKALEGLSYKVGNVDCLSTCNSFSFNSTIFPTNNAYFPL 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9199969 9201785 - Maker00024818 Lcy12g0724 648787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0724 272 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 105 266 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0724 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983(InterPro)
Lcy12g0724 272 Gene3D - 176 246 IPR036638 GO:0046983(InterPro)
Lcy12g0724 272 MobiDBLite consensus disorder prediction 97 143 - -
Lcy12g0724 272 Pfam Helix-loop-helix DNA-binding domain 189 231 IPR011598 GO:0046983(InterPro)
Lcy12g0724 272 MobiDBLite consensus disorder prediction 11 35 - -
Lcy12g0724 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 240 IPR036638 GO:0046983(InterPro)
Lcy12g0724 272 MobiDBLite consensus disorder prediction 1 35 - -
Lcy12g0724 272 CDD bHLH_AtIND_like 182 238 - -
Lcy12g0724 272 SMART finulus 187 236 IPR011598 GO:0046983(InterPro)
Lcy12g0724 272 MobiDBLite consensus disorder prediction 57 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0724 Lcy-Chr12:9199969 Lcy1g1143 Lcy-Chr1:10686800 4.77E-29 dispersed
Lcy4g0587 Lcy-Chr4:7077039 Lcy12g0724 Lcy-Chr12:9199969 2.51E-10 transposed
Lcy12g0724 Lcy-Chr12:9199969 Lcy3g2191 Lcy-Chr3:48815160 4.50E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19247 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0724 - - - 0.0