Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0744 ATGGTCGGCTTAAGCGTCATTCTCGAATCCAACCACGGAGATTTCTCTCCAAAATCCTCCCAAGTTATCAGCAAAGCCTCCGTCCTCAACCTCACCATCAACTCTTCTTCTCGAAACAACAATTCCTTCCTCCATTCCTGCTACCTCTGCAAGCAGAAGCTCTTGCCTGGAAAAGACATCTACATGTACAAAGGAGATAGAGGATTTTGTAGCGTGGAGTGCAGGTGCAGGCAGATTTTCATGGACGAAGAAGAGAGTGTAACGAAGGAGAATTGTTCGTCGAGACATGAAACGGCGTCGTCTTCGAGTTCGGAATCTGGGTCTTCGTCGTCTTCAATGGCGGCTTCTCGTAACCGTAAATCCACGAGGAATCGGAGAGGAGAGTTTGCGTACTGA 396 48.23 MVGLSVILESNHGDFSPKSSQVISKASVLNLTINSSSRNNNSFLHSCYLCKQKLLPGKDIYMYKGDRGFCSVECRCRQIFMDEEESVTKENCSSRHETASSSSSESGSSSSSMAASRNRKSTRNRRGEFAY 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9450124 9451237 - Maker00024834 Lcy12g0744 648807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0744 131 PANTHER FCS-LIKE ZINC FINGER 5 20 114 - -
Lcy12g0744 131 ProSiteProfiles Zinc finger FLZ-type profile. 42 86 IPR007650 -
Lcy12g0744 131 MobiDBLite consensus disorder prediction 93 118 - -
Lcy12g0744 131 Pfam zinc-finger of the FCS-type, C2-C2 35 84 IPR007650 -
Lcy12g0744 131 MobiDBLite consensus disorder prediction 85 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0744 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0744 Lcy-Chr12:9450124 Lcy1g0770 Lcy-Chr1:6573301 8.83E-13 dispersed
Lcy11g1403 Lcy-Chr11:37809087 Lcy12g0744 Lcy-Chr12:9450124 2.98E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g166 Blo01g00066 . . Bda08g00297 . . . . Cmo08g01209 . . . . . . Cpe08g00174 . . . . . . . . Cla06g00468 Cam06g0502 Cec06g0504 Cco06g0505 Clacu06g0486 Cmu06g0488 Cre06g1260 . . Cone7ag0137 Cone4ag0141 . . . . . . . . Bpe05g00828 . . . Sed09g0250 . . Cma08g01234 . . . . . Bhi12g02040 Tan06g2693 Cmetu11g0533 Lac11g0851 Hepe03g0091 . Lcy12g0744 Cla05g00665 Cam05g0729 Cec05g0736 Cco05g0736 Clacu05g0722 Cmu05g0687 Cre05g0761 Lsi09g01443 Csa03g01482 Chy06g00719 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002814 2 2 1 0 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 1 2 2 2 2 2 4 3 1 56