Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0752 ATGGCCACCGCCGCCTCCGACGATGACGACGGCTTCTTCTCTCAACCGTCGTACAAACGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAATTATCGTACTGTTGTTCGTCGTTCTTCTCATGATTTGTCTTCATCTCTACGTCCGATTGTACCTCCTCCCCTCCAGCCGCCGGCGATCCCGCCGCCGCCGTCGCCGCCGTCCGCAGTTCGTATTCACGGCAGAGCCTCGTATGGCCGCCGCTCCGTCGCGTGGTCTGCCGCAGTCGATTCTCAAATCCCTACCCGTGTTCGTTCACTCGAAGAAACCCGACCCGGATCCGATTTATTGCGCGGTTTGTTTATCCGAGTTTGAAGAGAACGAAATCGGCCGGATTATCCCCAAATGTAATCACAGCTTTCACGTGGGGTGTATTGACATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTGAAACCCGAGCTCGAACCCAGATCCGGGTCTCCCAATAACCCGGTCGAGATATCCGTGGATATTTTCGAACCGGGTTCGATATCGGGCGAGGGAGAACCGGGTCGTGGTAATCTGGTTGAGTTGGCGTCGTCGGTGGAGGTGGACGACGAGTCGAGGGAAGTGGACGACATGTCGGATCATGGGACCTCGAGGGCAACGGCGAATTTTGTGAAGTCGTTGTCTTTAAAGAGGATTCTGTGTAGTAGAACTAGAGATACGACGGAACCGGATCTAGAGAAGGAGGAAACGGAGGCGGTCGGTTCAGAAAGATAA 780 54.87 MATAASDDDDGFFSQPSYKRYALSGKIMLGAIIVLLFVVLLMICLHLYVRLYLLPSSRRRSRRRRRRRPQFVFTAEPRMAAAPSRGLPQSILKSLPVFVHSKKPDPDPIYCAVCLSEFEENEIGRIIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPELEPRSGSPNNPVEISVDIFEPGSISGEGEPGRGNLVELASSVEVDDESREVDDMSDHGTSRATANFVKSLSLKRILCSRTRDTTEPDLEKEETEAVGSER 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9592090 9592869 + Maker00024835 Lcy12g0752 648815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0752 259 SMART ring_2 111 152 IPR001841 -
Lcy12g0752 259 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lcy12g0752 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 159 IPR013083 -
Lcy12g0752 259 CDD RING-H2_EL5-like 111 153 - -
Lcy12g0752 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 172 - -
Lcy12g0752 259 Pfam Ring finger domain 111 153 IPR001841 -
Lcy12g0752 259 SUPERFAMILY RING/U-box 91 159 - -
Lcy12g0752 259 MobiDBLite consensus disorder prediction 239 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0752 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0752 Lcy-Chr12:9592090 Lcy4g0721 Lcy-Chr4:8723961 2.25E-31 dispersed
Lcy11g0075 Lcy-Chr11:773213 Lcy12g0752 Lcy-Chr12:9592090 3.63E-28 transposed
Lcy11g1398 Lcy-Chr11:37755665 Lcy12g0752 Lcy-Chr12:9592090 8.07E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g324 . . . . Bpe03g00470 . Bma10g00987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00573 . Bda05g00365 . . . . . Sed09g0253 . . . . . . . . Bhi12g02037 Tan06g2698 Cmetu11g1047 Lac11g0863 Hepe03g0088 . Lcy12g0752 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0752 . 19 185 Rapid Response to Elicitors AT3G16720 50.8 3.4e-38 156.4
Lcy12g0752 . 19 185 Rapid Response to Elicitors AT3G16720 50.8 3.4e-38 156.4
Lcy4g1887 . 1 338 Rapid Response to Elicitors AT3G05200 50.1 4.5e-75 279.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013742 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 0 1 0 2 1 1 0 1 1 1 1 1 2 1 0 25