Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0752 | ATGGCCACCGCCGCCTCCGACGATGACGACGGCTTCTTCTCTCAACCGTCGTACAAACGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAATTATCGTACTGTTGTTCGTCGTTCTTCTCATGATTTGTCTTCATCTCTACGTCCGATTGTACCTCCTCCCCTCCAGCCGCCGGCGATCCCGCCGCCGCCGTCGCCGCCGTCCGCAGTTCGTATTCACGGCAGAGCCTCGTATGGCCGCCGCTCCGTCGCGTGGTCTGCCGCAGTCGATTCTCAAATCCCTACCCGTGTTCGTTCACTCGAAGAAACCCGACCCGGATCCGATTTATTGCGCGGTTTGTTTATCCGAGTTTGAAGAGAACGAAATCGGCCGGATTATCCCCAAATGTAATCACAGCTTTCACGTGGGGTGTATTGACATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTGAAACCCGAGCTCGAACCCAGATCCGGGTCTCCCAATAACCCGGTCGAGATATCCGTGGATATTTTCGAACCGGGTTCGATATCGGGCGAGGGAGAACCGGGTCGTGGTAATCTGGTTGAGTTGGCGTCGTCGGTGGAGGTGGACGACGAGTCGAGGGAAGTGGACGACATGTCGGATCATGGGACCTCGAGGGCAACGGCGAATTTTGTGAAGTCGTTGTCTTTAAAGAGGATTCTGTGTAGTAGAACTAGAGATACGACGGAACCGGATCTAGAGAAGGAGGAAACGGAGGCGGTCGGTTCAGAAAGATAA | 780 | 54.87 | MATAASDDDDGFFSQPSYKRYALSGKIMLGAIIVLLFVVLLMICLHLYVRLYLLPSSRRRSRRRRRRRPQFVFTAEPRMAAAPSRGLPQSILKSLPVFVHSKKPDPDPIYCAVCLSEFEENEIGRIIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPELEPRSGSPNNPVEISVDIFEPGSISGEGEPGRGNLVELASSVEVDDESREVDDMSDHGTSRATANFVKSLSLKRILCSRTRDTTEPDLEKEETEAVGSER | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9592090 | 9592869 | + | Maker00024835 | Lcy12g0752 | 648815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0752 | 259 | SMART | ring_2 | 111 | 152 | IPR001841 | - | |
Lcy12g0752 | 259 | ProSiteProfiles | Zinc finger RING-type profile. | 111 | 153 | IPR001841 | - | |
Lcy12g0752 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 159 | IPR013083 | - | |
Lcy12g0752 | 259 | CDD | RING-H2_EL5-like | 111 | 153 | - | - | |
Lcy12g0752 | 259 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 24 | 172 | - | - | |
Lcy12g0752 | 259 | Pfam | Ring finger domain | 111 | 153 | IPR001841 | - | |
Lcy12g0752 | 259 | SUPERFAMILY | RING/U-box | 91 | 159 | - | - | |
Lcy12g0752 | 259 | MobiDBLite | consensus disorder prediction | 239 | 259 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0752 | Lcy-Chr12:9592090 | Lcy4g0721 | Lcy-Chr4:8723961 | 2.25E-31 | dispersed | |
Lcy11g0075 | Lcy-Chr11:773213 | Lcy12g0752 | Lcy-Chr12:9592090 | 3.63E-28 | transposed | |
Lcy11g1398 | Lcy-Chr11:37755665 | Lcy12g0752 | Lcy-Chr12:9592090 | 8.07E-44 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0752 | - | - | - | 0.0 |