Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0752 ATGGCCACCGCCGCCTCCGACGATGACGACGGCTTCTTCTCTCAACCGTCGTACAAACGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAATTATCGTACTGTTGTTCGTCGTTCTTCTCATGATTTGTCTTCATCTCTACGTCCGATTGTACCTCCTCCCCTCCAGCCGCCGGCGATCCCGCCGCCGCCGTCGCCGCCGTCCGCAGTTCGTATTCACGGCAGAGCCTCGTATGGCCGCCGCTCCGTCGCGTGGTCTGCCGCAGTCGATTCTCAAATCCCTACCCGTGTTCGTTCACTCGAAGAAACCCGACCCGGATCCGATTTATTGCGCGGTTTGTTTATCCGAGTTTGAAGAGAACGAAATCGGCCGGATTATCCCCAAATGTAATCACAGCTTTCACGTGGGGTGTATTGACATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTGAAACCCGAGCTCGAACCCAGATCCGGGTCTCCCAATAACCCGGTCGAGATATCCGTGGATATTTTCGAACCGGGTTCGATATCGGGCGAGGGAGAACCGGGTCGTGGTAATCTGGTTGAGTTGGCGTCGTCGGTGGAGGTGGACGACGAGTCGAGGGAAGTGGACGACATGTCGGATCATGGGACCTCGAGGGCAACGGCGAATTTTGTGAAGTCGTTGTCTTTAAAGAGGATTCTGTGTAGTAGAACTAGAGATACGACGGAACCGGATCTAGAGAAGGAGGAAACGGAGGCGGTCGGTTCAGAAAGATAA 780 54.87 MATAASDDDDGFFSQPSYKRYALSGKIMLGAIIVLLFVVLLMICLHLYVRLYLLPSSRRRSRRRRRRRPQFVFTAEPRMAAAPSRGLPQSILKSLPVFVHSKKPDPDPIYCAVCLSEFEENEIGRIIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPELEPRSGSPNNPVEISVDIFEPGSISGEGEPGRGNLVELASSVEVDDESREVDDMSDHGTSRATANFVKSLSLKRILCSRTRDTTEPDLEKEETEAVGSER 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9592090 9592869 + Maker00024835 Lcy12g0752 648815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0752 259 SMART ring_2 111 152 IPR001841 -
Lcy12g0752 259 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lcy12g0752 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 159 IPR013083 -
Lcy12g0752 259 CDD RING-H2_EL5-like 111 153 - -
Lcy12g0752 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 172 - -
Lcy12g0752 259 Pfam Ring finger domain 111 153 IPR001841 -
Lcy12g0752 259 SUPERFAMILY RING/U-box 91 159 - -
Lcy12g0752 259 MobiDBLite consensus disorder prediction 239 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0752 Lcy-Chr12:9592090 Lcy4g0721 Lcy-Chr4:8723961 2.25E-31 dispersed
Lcy11g0075 Lcy-Chr11:773213 Lcy12g0752 Lcy-Chr12:9592090 3.63E-28 transposed
Lcy11g1398 Lcy-Chr11:37755665 Lcy12g0752 Lcy-Chr12:9592090 8.07E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0752 - - - 0.0