Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0753 ATGTCGTCGAACGGATTTGCCAATGCCGAAGGTGACCAGAAGAAGAAAAAGATGGTCATAATAAGCGTCTCTTCTCTATTCCTCGTGGCAATGGTCGTCGCCGTTACCGTCGGCGTTAACAACACACCCCATGTAGGGAACACCGATGACGGCGGAGCCGCCGAGATTTCCACATCCACGAAAGCCATCCAAGCCATTTGTCAACCAACAGATTACAAAGAAACCTGCGAGCAGGGCCTCATGGCCGAAGCCGGTAACACAACGGACCCCAAGGAGCTCGTAAAAGCCGGCTTCAAAGTCGCCACCGCATATATCAACTCGGCGATTAAAAATTCCACCACTCTCCAGGAGCTGGCCAAAGACCCAAGAACCAACCAAGCCCTTCAGAACTGCCGCGAGCTTCTAGAATACGCCATCGACGATTTAACCCAGTCTTTCGATAGAATCGGCACCTTCGAAATGACGAAACTCGACGAGTTCGTCAACGATTTGAAGATCTGGCTGAGTGGGGCCCTCACCTACGAGCAAACTTGTTTGGACGGATTCGAAAACACAACCGGTGATGCCGGTGAGAAAATGCAGAAGTTTTTGAAGTCCGCTCAGCAAATGACGACTAACGGTCTTGCGATCGTAACTGAATTGTCTACTATTATGGCGTCAATGATGCCGGGAATGACGGGTGTTGGACGGCGGCTGTTGGACGAGGGAGTGCCGTCGTGGGTGAGCGACGGAAAGAGGAGGCTGATGCAGGCGGGACCGGGGGGGCTGAAGCCGGACGTGGTGGTGGCTCAAGATGGAAGTGGAAAATACAAGACGATCAACGCGGCTTTGGTTGATGTGCCGAAGAAGAGTAACAAGACATTTGTGATTTATGTCAAGGCTGGAATTTATAAGGAAATCGTTGTTGTTCCTAAGGCTTTGACTCATGTTACAATGTACGGGGATGGCCCAACCAAGACTGTCGTCACTGGTAGTTTGAACTTCATCGATGGCATTCAAACTTTCAAGACCGCAACCTTCTGTAAGTCCACATTCTTCAGTACTCTTTGTATTCTTTTATATATGTTGAAACCTAATGAATCCGAATTTATGTTTGAAACAGCTGTGGTCGGAAGTGATTTCTTCGCGAAAGACATGGGATTCGTGAACAGTGCAGGAGCGGCAAAGCACCAAGCCGTGGCGTTACGAGTCCAATCCGACAGATCGATCTTCTACAACTGTCAAATGGATGGGTATCAAGACACGCTCTACGCCCATGCCCACCGTCAGTTCTACCGTGACTGCTCGATCAGTGGCACCATTGACTTCGTCTTCGGCAACTCCGCCGCCATCTTCCAGAACTGCAAACTAATCGTCCGAAAGCCAATGGATAACCAACAATGCATCGTGACGGCTCAAGGGCGGATGAACCGCCGCGAACCGACCGCCCTAGTGTTCCAAAACTGCCACTTCATGGGCGACCCGGCTTACTTGCCATTCAAGGCCATCAACAAGGCTTATTTGGGGCGACCTTGGAAGGCATATTCACGAACCCTCATCATGGGTTCTCAAATCGACGATTTGATCCAGCCCGAGGGATGGTTGCCGTGGGGTGGCGATTTTGGGCTGACCACATTGTTCTACGCGGAGGTTCAGAACAAGGGACCAGGTGCCGATCTGAGCAAGAGAGTGAAGTGGCGAGGAATTAAAACTATTACGCCAGATCACGCCGCTAAATTCACTCCCAGGGTATTTATCGACGGCGATGCTTGGATTAAAGCCAAGGGAATTCCGTATGCTTCTGGAATGATGTAA 1794 50.5 MSSNGFANAEGDQKKKKMVIISVSSLFLVAMVVAVTVGVNNTPHVGNTDDGGAAEISTSTKAIQAICQPTDYKETCEQGLMAEAGNTTDPKELVKAGFKVATAYINSAIKNSTTLQELAKDPRTNQALQNCRELLEYAIDDLTQSFDRIGTFEMTKLDEFVNDLKIWLSGALTYEQTCLDGFENTTGDAGEKMQKFLKSAQQMTTNGLAIVTELSTIMASMMPGMTGVGRRLLDEGVPSWVSDGKRRLMQAGPGGLKPDVVVAQDGSGKYKTINAALVDVPKKSNKTFVIYVKAGIYKEIVVVPKALTHVTMYGDGPTKTVVTGSLNFIDGIQTFKTATFCKSTFFSTLCILLYMLKPNESEFMFETAVVGSDFFAKDMGFVNSAGAAKHQAVALRVQSDRSIFYNCQMDGYQDTLYAHAHRQFYRDCSISGTIDFVFGNSAAIFQNCKLIVRKPMDNQQCIVTAQGRMNRREPTALVFQNCHFMGDPAYLPFKAINKAYLGRPWKAYSRTLIMGSQIDDLIQPEGWLPWGGDFGLTTLFYAEVQNKGPGADLSKRVKWRGIKTITPDHAAKFTPRVFIDGDAWIKAKGIPYASGMM 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9638380 9640173 - Maker00025082 Lcy12g0753 648816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0753 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 214 IPR035513 -
Lcy12g0753 597 PANTHER PECTINESTERASE 16 587 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy12g0753 597 CDD PMEI-like_3 65 216 - -
Lcy12g0753 597 FunFam Pectinesterase 4 256 596 - -
Lcy12g0753 597 SUPERFAMILY Pectin lyase-like 257 594 IPR011050 -
Lcy12g0753 597 Pfam Plant invertase/pectin methylesterase inhibitor 61 210 IPR006501 GO:0004857(InterPro)
Lcy12g0753 597 NCBIfam pectinesterase inhibitor domain 58 214 IPR006501 GO:0004857(InterPro)
Lcy12g0753 597 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Lcy12g0753 597 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Lcy12g0753 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 215 IPR035513 -
Lcy12g0753 597 Pfam Pectinesterase 368 582 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy12g0753 597 Pfam Pectinesterase 259 342 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy12g0753 597 SMART PMEI_2 58 210 IPR006501 GO:0004857(InterPro)
Lcy12g0753 597 FunFam Pectinesterase 59 215 - -
Lcy12g0753 597 Gene3D - 254 596 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1394 Lcy-Chr11:37726451 Lcy12g0753 Lcy-Chr12:9638380 1.18E-253 dispersed
Lcy11g1396 Lcy-Chr11:37737903 Lcy12g0753 Lcy-Chr12:9638380 1.68E-253 dispersed
Lcy12g0753 Lcy-Chr12:9638380 Lcy2g2224 Lcy-Chr2:46148720 3.93E-222 dispersed
Lcy12g0753 Lcy-Chr12:9638380 Lcy12g0754 Lcy-Chr12:9647648 0 tandem
Lcy10g1552 Lcy-Chr10:39889570 Lcy12g0753 Lcy-Chr12:9638380 2.26E-55 transposed
Lcy11g1390 Lcy-Chr11:37692817 Lcy12g0753 Lcy-Chr12:9638380 3.17E-255 wgd
Lcy12g0753 Lcy-Chr12:9638380 Lcy3g1771 Lcy-Chr3:44975720 3.47E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0753 K01051 - csv:101221958 924.465