Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0754 ATGTCGAACGCCGAAGGTGACAAAAAGAAGAAGAATATCGCCATAGTAAGCGTCTCTGCTCTGATCCTCGTTGCAATGGTCGTCGCCGTTACTGTTGGCGTCAACAGCTCACCCCACGGTGACGATCACGGTGAGGGTCATGGTGACGGTCACGGTGACGGAGGTGCTGAAATCAAGACATCGACGAAAGCAATCCAGTCCATTTGTCGACCAACGGATTTCAAAGAAACCTGCGAGCAGAGCCTGATGGCTGAAGCCAGTAACACGACGGACCCGAAAGAGCTCGCGAAAGCCGGCTTCAAAGCCGCCGTCGAATATATAAACACGGCGATTAGAAATTCCACCACACTCAAAGAGCTGGCCAAGGAACCAAGAACCAACCAAGCCCTTCAGAACTGCCGCGAGCTTCTGGAATACGCCATCGACGATTTAACCCAATCTTTCAACAGAATCGGCACCTTCGAAATGTCGAAACTCGACGAGTTCGTCAACGATTTGAAGATCTGGCTGAGTGGGGCCCTCACGTACGAGCAGACTTGTTTGGACGGATTCGAAAACACAACCGGTGATGCCGGTCAGAAAATGCAGCAGTTTTTGAAGTCCGCTCAGGAAATGACGAGTAACGGTCTTGCGATCGTAACTGAATTGTCCACTATTATGGGATCACTTCATCAAATGCCGGGAGCGACGACGGGACGACGGCTGTTGGACGAGGGAGTGCCGTCGTGGGTGAGCGAAGGAAAGAGGCGCTTGATGCAGGCGGGACCGGCGGGGCTGAAACCGGACGTGGTGGTGGCTCAGGATGGAAGTGGAAAATACAAGACGATCTCTGAAGCTTTGGTTGATGTGCCGAAGAAGAGTAATAAGACATTTGTGATTTATGTGAAGGCTGGAATTTATAAGGAAATCGTTGTTGTTCCTAAGGATGTGACTCATCTTACGATGTACGGCGATGGCCCAACCAAGACTGTCGTCACTGGTAGTCTCAACTTTATCGATGGCGTTCAAACATTCAAGACCGCAACTTTCTCTACGATCGGAAGTGATTTCTTCGCGAAAGACATGGGATTCGTGAACAGTGCTGGAGCTGCAAAGCACCAAGCCGTGGCGTTACGAGTCCAATCCGATAGAGCGATCTTTTACAACTGCCAAATGGATGGGTATCAAGATACTCTCTACGCCCATGCCCATCGCCAGTTCTACCGTGACTGTTCGATCAGTGGCACCATCGACTTCGTCTTCGGCAACGCCGCCGCCGTCTTCCAGAACTGCAAACTAATCGTCCGAAAGCCAATGGATAACCAACAGTGCATCGTCACGGCTCAAGGCCGGCTCAACCGCCGCGAACCGACCGCCCTAGTGTTCCAAAGCTGCCACTTCATGGGCGACCCGGCTTACTTGCCATTCAAGGCCGTCAACAAGGCTTACTTGGGGCGACCCTGGAAGGAATATTCACGAACCCTCATTATCGGGTCTCAAATCGACGATTTGATCCAGCCCGAGGGATGGTTGCCGTGGGGTGGCGATTTTGGGCTGAACACGCTGTTCTACGCGGAGGTTCAGAACAAGGGACCAGGTGCCGATCTGAGCAAGAGGGTGAAGTGGCGAGGAATTAAAACTATTACGCCAGATCACGCCGCTAAATTCACTCCCAGGGTATTTATCGACGGCGATGCTTGGATTAAAAACAAGGGAATTCCGTATGCTTCTGGAATGATGTAA 1722 51.63 MSNAEGDKKKKNIAIVSVSALILVAMVVAVTVGVNSSPHGDDHGEGHGDGHGDGGAEIKTSTKAIQSICRPTDFKETCEQSLMAEASNTTDPKELAKAGFKAAVEYINTAIRNSTTLKELAKEPRTNQALQNCRELLEYAIDDLTQSFNRIGTFEMSKLDEFVNDLKIWLSGALTYEQTCLDGFENTTGDAGQKMQQFLKSAQEMTSNGLAIVTELSTIMGSLHQMPGATTGRRLLDEGVPSWVSEGKRRLMQAGPAGLKPDVVVAQDGSGKYKTISEALVDVPKKSNKTFVIYVKAGIYKEIVVVPKDVTHLTMYGDGPTKTVVTGSLNFIDGVQTFKTATFSTIGSDFFAKDMGFVNSAGAAKHQAVALRVQSDRAIFYNCQMDGYQDTLYAHAHRQFYRDCSISGTIDFVFGNAAAVFQNCKLIVRKPMDNQQCIVTAQGRLNRREPTALVFQSCHFMGDPAYLPFKAVNKAYLGRPWKEYSRTLIIGSQIDDLIQPEGWLPWGGDFGLNTLFYAEVQNKGPGADLSKRVKWRGIKTITPDHAAKFTPRVFIDGDAWIKNKGIPYASGMM 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9647648 9649697 - Maker00024787 Lcy12g0754 648817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0754 573 Pfam Plant invertase/pectin methylesterase inhibitor 63 212 IPR006501 GO:0004857(InterPro)
Lcy12g0754 573 SMART PMEI_2 60 212 IPR006501 GO:0004857(InterPro)
Lcy12g0754 573 FunFam Pectinesterase 61 217 - -
Lcy12g0754 573 MobiDBLite consensus disorder prediction 37 57 - -
Lcy12g0754 573 PANTHER PECTINESTERASE 12 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy12g0754 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 216 IPR035513 -
Lcy12g0754 573 SUPERFAMILY Pectin lyase-like 259 570 IPR011050 -
Lcy12g0754 573 NCBIfam pectinesterase inhibitor domain 60 216 IPR006501 GO:0004857(InterPro)
Lcy12g0754 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 217 IPR035513 -
Lcy12g0754 573 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Lcy12g0754 573 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Lcy12g0754 573 FunFam Pectinesterase 256 572 - -
Lcy12g0754 573 Pfam Pectinesterase 262 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy12g0754 573 CDD PMEI-like_3 67 218 - -
Lcy12g0754 573 MobiDBLite consensus disorder prediction 40 56 - -
Lcy12g0754 573 Gene3D - 257 572 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1552 Lcy-Chr10:39889570 Lcy12g0754 Lcy-Chr12:9647648 2.84E-55 dispersed
Lcy12g0754 Lcy-Chr12:9647648 Lcy2g2224 Lcy-Chr2:46148720 3.53E-219 dispersed
Lcy12g0753 Lcy-Chr12:9638380 Lcy12g0754 Lcy-Chr12:9647648 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0754 K01051 - csv:101221958 917.146