Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0767 ATGGGATCGGAGCAGTTGATGGCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTACGGCTTCGATGTCGTCGTTTTTCTCGTTCCATCACGACGCTCCTGAGCCGACGAGGATTTTCGATGAGTTACCGAAGGCCACAATCATTTCCGTATCTCGCCCTGATGCCGGCGATATCAGTCCGATGCTCCTTTCTTATACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGTTGAAGAAAGCTTCCCATGTATTCTATTTGCATTTTGCATTAAAGAAACGGGCGTTCATTGAGGAAATTCATGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGAAAACACAACAGTCCCAGATGAGGATGGACCAGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGCGCTGCCCTGCCTATTATTCGGCCAGCCTTGGGAAGGCAGCAGTCTATGTCTGATAGAGCTAAGAATGCCATGCAAGGGTATCTGAATCACTTCTTGAGTAACATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCGGAATACGGCCCAAAGTTGAAAGAGGATTATGTCATGGTGAAACATCTACCTAAAATTGCAAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCTATGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGCTTTTTGGCCTTGTTGGGAGATCCTTTTGATACCCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCTGATGGCAATGGAGATGGACGAGTATCTTTGGCTAAGGAAATTAAGGAGCGAAATCCATTACGACATTCATTTAAGGTGACGTGTGGAAATAGGAATATTAGGATAAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGTTCTTTTGCTCCTCCAAGGGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTTATCGATGGCCTAGCAGCTTTTGAAGCAATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGCTGGTGGCTTTGCCCAGAATTGTATCTGCGGCGTCCCTTTATTTCAAATGCTTCATCTAGGCTCGACGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATCCTTCTATACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAGCTTCTCGGCATCCATGAGAATGTGAGAGTATTAAGATACCCTGACCACTTCTCCAGTGGCGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATCGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCAGAACATAAAGTTGGCGACTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAAAGATGAGTTGGATCGTGGGAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTTTGGGGACCACCTTGTCGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAGTAGCCGAGAGTTGGAGGTTGAAAAGAAGAATTTTGACAATCCTAAAGGAACAACAACGCAGGATTCATTTTCTCGAGGATCATCTTTTCATGATATTCCATTGCTTTTGCCTCAAGAAGCTGATGGACCAGATGCTCAAAATGAAGATTCAAAAGTAAATGGACTGGAGCCCGTTGCTATTCCCCTTGATCAGCCAAGTAAGATCAGCAGCGGTCTCTCGTTCTCTTTCAGGAAGATCAAAGTTGAACCCATAGGTCCAGATATGCCTCTGAAAGGCTTTGTTGATGATTTTGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAAAAGCACATCATCGTGTCATTAGTAGTTCAGATTTTGAGTGGTGGGAAACACAAGATAGGGGACATCATGGTGGCTTCACCGATGAATCTGGACAAGTTGGTCCATGTGCTTCATGTCGTTGCCAGGTCATCAGAAGTGTCAGTCAGTGGTCTGCTGGGACAAGCCAAACTGAAGAGAGCATTCACATTGCATATTGCTCTCTTATAGAGAAAGCAGAACATTTTATCTATATTGAGAATCAATTTTTTATATCAGGCCTCTCAGGAGATGATTCGATACGTAATCGCGTGTTAGAAGCCTTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGACTTTTAGGGTTATTATTGTCGTACCACTGTTACCTGGATTTCAGGGGGGTCTGGATGACAGTGGTGCAGCATCAGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATTACATAATCTTTATGAAGTTCTTGGTTCAAAAGTTCATGATTATATATCATTCTTTGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTTCATAGTAAAATTATGATTATCGATGATTGCATTGCTTTGATTGGGTCGGCTAACATCAACGACAGGAGTTTACTTGGTTCTAGGGATTCTGAGATTGCTATTGTTATTGAAGATAACGAACTTATGAATTCATATATGGGAGGACAACCATGGAAAGCGGGAAAGTTTTGTTGGAGTCTCCGTCTCTCTCTTTGGTCTGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCAGTTTGCGATTCAACCTACAAGGATACGTGGATGGCAACTGCTAAGACAAACACAACAATATACCAGGATGTTTTCTCTTGCATTCCAAATGACCTGATAAATTCCAGAGCTGGACTGAGACAAAGCGTCGCGTTCTGGAAAGAGAGACTAGGCCACACCACAATAGATTTAGGAATTGCACCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATTGAAAGGATTGATCCAGTAGAGAGATTAAGTTCAGTGAAGGGGCATCTTGTTTCCTTCCCATTGGAATTCCTCAGCAAAGAAGATTTGAGACCTGTGTTCAATGAAAGTGAGTACTATGCATCTCAAGTTTTTCATTGA 3345 42.81 MGSEQLMAGGGPRYVQMQSEPPTASMSSFFSFHHDAPEPTRIFDELPKATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGENTTVPDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQQSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIAKEDDSRKCCLCLWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFISNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMKDELDRGKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWSSRELEVEKKNFDNPKGTTTQDSFSRGSSFHDIPLLLPQEADGPDAQNEDSKVNGLEPVAIPLDQPSKISSGLSFSFRKIKVEPIGPDMPLKGFVDDFDHLDSHGKLSGDGKKAHHRVISSSDFEWWETQDRGHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSQTEESIHIAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKTFRVIIVVPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYEVLGSKVHDYISFFGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGSRDSEIAIVIEDNELMNSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVCDSTYKDTWMATAKTNTTIYQDVFSCIPNDLINSRAGLRQSVAFWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPVERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9870741 9881950 + Maker00025117 Lcy12g0767 648830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0767 1114 PIRSF PLD_euk 47 626 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Lcy12g0767 1114 PIRSF PLD_euk 697 1114 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Lcy12g0767 1114 Coils Coil 98 118 - -
Lcy12g0767 1114 MobiDBLite consensus disorder prediction 122 152 - -
Lcy12g0767 1114 SMART pld_4 911 938 IPR001736 GO:0003824(InterPro)
Lcy12g0767 1114 SMART pld_4 476 503 IPR001736 GO:0003824(InterPro)
Lcy12g0767 1114 Pfam Phospholipase D Active site motif 476 503 IPR001736 GO:0003824(InterPro)
Lcy12g0767 1114 SUPERFAMILY Phospholipase D/nuclease 751 959 - -
Lcy12g0767 1114 CDD PLDc_vPLD1_2_yPLD_like_1 369 514 - -
Lcy12g0767 1114 Gene3D Endonuclease Chain A 741 968 - -
Lcy12g0767 1114 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 911 938 IPR001736 GO:0003824(InterPro)
Lcy12g0767 1114 SUPERFAMILY Phospholipase D/nuclease 321 596 - -
Lcy12g0767 1114 Gene3D Endonuclease Chain A 364 602 - -
Lcy12g0767 1114 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 476 503 IPR001736 GO:0003824(InterPro)
Lcy12g0767 1114 Gene3D - 242 339 IPR011993 -
Lcy12g0767 1114 Pfam PLD-like domain 913 960 IPR025202 -
Lcy12g0767 1114 SUPERFAMILY PH domain-like 245 339 - -
Lcy12g0767 1114 FunFam Phospholipase 745 965 - -
Lcy12g0767 1114 CDD PLDc_vPLD1_2_yPLD_like_2 771 955 - -
Lcy12g0767 1114 ProSiteProfiles PH domain profile. 250 341 IPR001849 -
Lcy12g0767 1114 PANTHER PHOSPHOLIPASE D 171 1095 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy12g0767 1114 CDD PH_PLD 192 339 - -
Lcy12g0767 1114 SMART PH_update 215 343 IPR001849 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0767 Lcy-Chr12:9870741 Lcy4g1814 Lcy-Chr4:44177311 0 dispersed
Lcy12g0767 Lcy-Chr12:9870741 Lcy1g0587 Lcy-Chr1:4994397 8.97E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0767 K01115 - csv:101211856 2144.39