Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0768 ATGGTGCTATTTCCGGCAGTTATTGAGGGAATGGTGAGAAATATGTCGATAAAGAAAAAGAATAATGAAGACGGCGGCAAAGAAGCGGCTCGAGAAATGGCGAAAGAGGCAAAAAGGAACAAATCGATGATTTGTTTATCCGGAAGTGTTAAAACAAGCAAGTTTGATGATATTTCATCTGTTTGCTCCAAGAGAGGAAATAAAGGAACTAATCAGGATTCCTTGGTTGTTTGGGAGGACTATGGATGCCAAGAAGACATGGTTTTCTGTGGGATCTTTGATGGACATGGTCCGTGGGGCCACATGGTTAGCAAACATGTCAGAAAGTCACTGCCTGCTCAATTATTGACCAATTGGCAACGAAACCTTTCAATGGAAGCCGACCAAAACCTTCTTCCTTCCAAAATATGGAAGCATTCTTGCTTAAAAACATATGCCGCCATTGATGAGGAGCTCAAGCAACACCCTCGCATTGATTCTTTTTACAGTGGCACGACGGCTTTGACAGTGGTTAAACAGGGCCGACATCTAGTTGTTGCAAATGCTGGCGATTCACGAGCTGTGTTGGCTGTAACTTCTGATGATGGCTGCTTGCATCCAGTTCAACTCTCCGTTGATTTCAGACCTAATTTACCTGAGGAGGCTGAGAGAATAAAGCAATCGAAAGGGCGGGTGGTATGTTTAAAAGACGAACCAGGCGTGTATCGGGTGTGGAGTCCGAAGTCGGGGACGCCAGGTTTGGCAATTTCAAGAGCATTTGGCGATTACTGCACCAAACAGTACGGCCTCATTTCTGTGCCTGATGTAACCCATCGAATCATTACCACTGGAGATCAGTTTGTCATTGTGGCTACTGACGGGGTATGGGACGTCATGTCGAATCAAGAAGCAGTTCACATAGTTTCTTCAACGCCAAATAGGGAAATGTCGGCCAAAAGGCTAGTGGACTGTGCTGCTCTTGCATGGAAATCCAAGAAACGAGGCATTGCAAGGGACGACATATCGGCCATTTGCCTCTTTTTTCATGCTTCATCCTCAGAAAATCAGTGA 1050 45.24 MVLFPAVIEGMVRNMSIKKKNNEDGGKEAAREMAKEAKRNKSMICLSGSVKTSKFDDISSVCSKRGNKGTNQDSLVVWEDYGCQEDMVFCGIFDGHGPWGHMVSKHVRKSLPAQLLTNWQRNLSMEADQNLLPSKIWKHSCLKTYAAIDEELKQHPRIDSFYSGTTALTVVKQGRHLVVANAGDSRAVLAVTSDDGCLHPVQLSVDFRPNLPEEAERIKQSKGRVVCLKDEPGVYRVWSPKSGTPGLAISRAFGDYCTKQYGLISVPDVTHRIITTGDQFVIVATDGVWDVMSNQEAVHIVSSTPNREMSAKRLVDCAALAWKSKKRGIARDDISAICLFFHASSSENQ 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9887431 9892974 + Maker00024926 Lcy12g0768 648831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0768 349 Pfam Protein phosphatase 2C 61 318 IPR001932 -
Lcy12g0768 349 PANTHER PROTEIN PHOSPHATASE 41 340 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy12g0768 349 SMART PP2C_4 48 339 IPR001932 -
Lcy12g0768 349 Gene3D - 21 344 IPR036457 -
Lcy12g0768 349 CDD PP2Cc 58 341 IPR001932 -
Lcy12g0768 349 ProSiteProfiles PPM-type phosphatase domain profile. 58 341 IPR001932 -
Lcy12g0768 349 SUPERFAMILY PP2C-like 57 342 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0768 Lcy-Chr12:9887431 Lcy2g2311 Lcy-Chr2:48436680 3.96E-127 dispersed
Lcy12g0768 Lcy-Chr12:9887431 Lcy4g1812 Lcy-Chr4:44155899 1.49E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0768 - - - 0.0