Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0773 ATGGGTGTTTTCAGTTACGAAAACGAAGTGGCGACAGTCATTCCTCCAGCCAAGTTCTTCAAGGCATTTATTCTTGATGCCGACCGACTTTTCCCCAAGATTGTGCCACATCAGCCCCAAACCGAAATTCTCGAAGGAAATGGAGGGCCTGGAACTATCAAGAAAATCACCTTCACTCACGGAGTTCAATCACACCCAGAACAACAACGGATTCAAATCCGTGATCATAGGAGGGGCGAAGTGAAATCAATAAAGCACAGAGTGGAGATAGTGGACGAAGCATCGTTGACGTTCAAATACACAGTGTTAGAGGGAGATCATTTATCGGACAGTATAGACCAAATTTCAAAGGAAATAAAGGTGACGGCAGGTCCCGACGGGGGATCCATTTTGAAGAGCAAGAGCGTTTACCACACGAAAGGAGACCACCAAATCAACGAGGAGAAGCTCAAGGCCGCCGAGGAGAAGGGATTGGCCCTTCTTAAGGCGGCCGAGACCTACCTCTTGGCCAACCCCGCCGAATACAACTAA 531 48.21 MGVFSYENEVATVIPPAKFFKAFILDADRLFPKIVPHQPQTEILEGNGGPGTIKKITFTHGVQSHPEQQRIQIRDHRRGEVKSIKHRVEIVDEASLTFKYTVLEGDHLSDSIDQISKEIKVTAGPDGGSILKSKSVYHTKGDHQINEEKLKAAEEKGLALLKAAETYLLANPAEYN 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10027002 10028529 + Maker00025093 Lcy12g0773 648836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0773 176 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Lcy12g0773 176 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Lcy12g0773 176 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Lcy12g0773 176 CDD Bet_v1-like 4 168 - -
Lcy12g0773 176 Pfam Pathogenesis-related protein Bet v 1 family 1 76 IPR000916 GO:0006952(InterPro)
Lcy12g0773 176 Pfam Pathogenesis-related protein Bet v 1 family 79 171 IPR000916 GO:0006952(InterPro)
Lcy12g0773 176 SUPERFAMILY Bet v1-like 2 173 - -
Lcy12g0773 176 Gene3D - 2 175 IPR023393 -
Lcy12g0773 176 FunFam Major pollen allergen Bet v 1-A 71 175 - -
Lcy12g0773 176 PANTHER OS03G0300400 PROTEIN-RELATED 1 174 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0773 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0773 Lcy-Chr12:10027002 Lcy4g1012 Lcy-Chr4:17992042 5.97E-32 dispersed
Lcy12g0773 Lcy-Chr12:10027002 Lcy12g0774 Lcy-Chr12:10031690 8.02E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0740 . Cone7ag0122 Cone4ag0125 . . . . Blo02g00489 . . . . . . . . . . . . . . . . Bhi12g01894 Tan06g2719 Cmetu11g0065 . . . Lcy12g0773 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145