Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0777 ATGGATCTGAGCCTCATGAAGGGATCGATGCCGACGCCGACTTCAATTTTTGCTAGAAAAGCCACTGAAATGGTTTCTGATCAGTTTCCGGCGGGTCTTCGTGTCCTGGTTGTGGACGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGTAATCGGGCAGAGATTGCATTGTCCATGCTTCGTGAGAACAAAAACGGGTTCGATATTGTCTTAAGTGACGTGCATATGCCTGACATGGATGGTTTCAAACTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTCATCATGATGTCAGCAGATGATGGGAAGAATGTTGTCATGAAGGGAGTGATTCATGGTGCTTGCGATTACTTGATCAAGCCTGTTCGAATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGAAGCGTGGATGATGGAGATCGAGAGCAAAATCCATCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCGACTTTAAAGAAGCCCAGGGTGGTATGGTCCGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAATGTTCCTGGGCTTACTAGGGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACACCAATGTAATTTGAACAACTCTTTTATCAACCCCCAAGACCCACCTTTTGGGTCAATGTCAATGGCCTCATTCAATGGAATTGATCTTCAGACGCTTTCGGTCACCGGTCAACTCTCGCCTCAAAGTCTCGCTGCACTCCAAGCAACAGGACTTCGTAGGCCGACAGCAAAATCTAGCATATCCATGGCTCTTGTCGATCAGAACAACATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACACCTAAATAACAGTAAACCAGTAAACTTGTTTCATGGAATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCACCCTTCTGTACAGACTCAGGCGAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGTACTCAACTAATGCATTTGTCTCAACAGCACACTGGAGGACAGACTATAAATAACTCTCCTGCTGGCCACTTACCCAGAATTCCATCGACAATAAGGAAGCCGATCATATCAGGTAGCATTACGAGGGGAAATGGTGCTGCTGATAATAGCCAAGGACCCGGATACAACCTAATTTCGCCAGCTTCGTCGATGGTGAACTTTCCAATGAACCAAACCACTGAATTGTCAAACAATTTTTCTCTTCAGAGTGATTCGATGGTATCTACCCTGACTTGTAAAGGGGTGTTTCAAGAAGAGATTAGCTCAGATCTAAAAGGGTCGGGCGGACTAATGTCGAGTTATGATGTTTATAATGACTTGCATCTGCCGAAATCCCATGACTGGGATTCTCAGAATGTAAGCAGCCTGGCCTTCGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCTCATCCTCAACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCAAAATTCATCCGTCGTTGGAAAGACTATCTTTTCCTTTTCAGATGGAACTCAACCCGAGAATGCACAAAGTAACGGCCAAAACTCGCTTCTCAATCCCGTGGAGGTCAAACCTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCCGAGAACTTTGGCCAGGATGAACTTCTTAGTGTCTTCCTCAAACAACAACAACAAGGAGGAGACAACGGATCAAGGTACCAAACGGAGAATATTTGTGTTTAG 2016 44.3 MDLSLMKGSMPTPTSIFARKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNPSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSHQCNLNNSFINPQDPPFGSMSMASFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMHPSVQTQANINMQLNIKSEHGGTQLMHLSQQHTGGQTINNSPAGHLPRIPSTIRKPIISGSITRGNGAADNSQGPGYNLISPASSMVNFPMNQTTELSNNFSLQSDSMVSTLTCKGVFQEEISSDLKGSGGLMSSYDVYNDLHLPKSHDWDSQNVSSLAFGTSHHGNFIQDSFDISSSTLIHHGFPSSQTNGQNQNSSVVGKTIFSFSDGTQPENAQSNGQNSLLNPVEVKPQRIPDASYQTDLLSENFGQDELLSVFLKQQQQGGDNGSRYQTENICV 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10055481 10060730 + Maker00024851 Lcy12g0777 648840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0777 671 PIRSF RR_ARR_type-B 15 665 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy12g0777 671 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 190 210 - -
Lcy12g0777 671 FunFam Two-component response regulator 33 170 - -
Lcy12g0777 671 Gene3D - 33 165 - -
Lcy12g0777 671 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Lcy12g0777 671 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 174 189 - -
Lcy12g0777 671 FunFam Two-component response regulator 209 272 - -
Lcy12g0777 671 Gene3D - 210 272 - -
Lcy12g0777 671 SMART REC_2 33 145 IPR001789 GO:0000160(InterPro)
Lcy12g0777 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 366 IPR045279 GO:0009736(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 597 619 - -
Lcy12g0777 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 156 173 - -
Lcy12g0777 671 SUPERFAMILY CheY-like 32 156 IPR011006 -
Lcy12g0777 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Lcy12g0777 671 MobiDBLite consensus disorder prediction 156 210 - -
Lcy12g0777 671 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Lcy12g0777 671 CDD REC_typeB_ARR-like 35 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0777 Lcy-Chr12:10055481 Lcy2g0162 Lcy-Chr2:1259169 3.15E-81 dispersed
Lcy13g1722 Lcy-Chr13:36191370 Lcy12g0777 Lcy-Chr12:10055481 1.14E-89 transposed
Lcy3g1781 Lcy-Chr3:45069062 Lcy12g0777 Lcy-Chr12:10055481 1.57E-06 transposed
Lcy11g1369 Lcy-Chr11:37414130 Lcy12g0777 Lcy-Chr12:10055481 6.44E-247 wgd
Lcy12g0777 Lcy-Chr12:10055481 Lcy3g1780 Lcy-Chr3:45056757 1.07E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19251 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0777 K14491 - csv:101210138 1168.68