Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0777 ATGGATCTGAGCCTCATGAAGGGATCGATGCCGACGCCGACTTCAATTTTTGCTAGAAAAGCCACTGAAATGGTTTCTGATCAGTTTCCGGCGGGTCTTCGTGTCCTGGTTGTGGACGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGTAATCGGGCAGAGATTGCATTGTCCATGCTTCGTGAGAACAAAAACGGGTTCGATATTGTCTTAAGTGACGTGCATATGCCTGACATGGATGGTTTCAAACTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTCATCATGATGTCAGCAGATGATGGGAAGAATGTTGTCATGAAGGGAGTGATTCATGGTGCTTGCGATTACTTGATCAAGCCTGTTCGAATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGAAGCGTGGATGATGGAGATCGAGAGCAAAATCCATCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCGACTTTAAAGAAGCCCAGGGTGGTATGGTCCGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAATGTTCCTGGGCTTACTAGGGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACACCAATGTAATTTGAACAACTCTTTTATCAACCCCCAAGACCCACCTTTTGGGTCAATGTCAATGGCCTCATTCAATGGAATTGATCTTCAGACGCTTTCGGTCACCGGTCAACTCTCGCCTCAAAGTCTCGCTGCACTCCAAGCAACAGGACTTCGTAGGCCGACAGCAAAATCTAGCATATCCATGGCTCTTGTCGATCAGAACAACATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACACCTAAATAACAGTAAACCAGTAAACTTGTTTCATGGAATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCACCCTTCTGTACAGACTCAGGCGAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGTACTCAACTAATGCATTTGTCTCAACAGCACACTGGAGGACAGACTATAAATAACTCTCCTGCTGGCCACTTACCCAGAATTCCATCGACAATAAGGAAGCCGATCATATCAGGTAGCATTACGAGGGGAAATGGTGCTGCTGATAATAGCCAAGGACCCGGATACAACCTAATTTCGCCAGCTTCGTCGATGGTGAACTTTCCAATGAACCAAACCACTGAATTGTCAAACAATTTTTCTCTTCAGAGTGATTCGATGGTATCTACCCTGACTTGTAAAGGGGTGTTTCAAGAAGAGATTAGCTCAGATCTAAAAGGGTCGGGCGGACTAATGTCGAGTTATGATGTTTATAATGACTTGCATCTGCCGAAATCCCATGACTGGGATTCTCAGAATGTAAGCAGCCTGGCCTTCGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCTCATCCTCAACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCAAAATTCATCCGTCGTTGGAAAGACTATCTTTTCCTTTTCAGATGGAACTCAACCCGAGAATGCACAAAGTAACGGCCAAAACTCGCTTCTCAATCCCGTGGAGGTCAAACCTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCCGAGAACTTTGGCCAGGATGAACTTCTTAGTGTCTTCCTCAAACAACAACAACAAGGAGGAGACAACGGATCAAGGTACCAAACGGAGAATATTTGTGTTTAG 2016 44.3 MDLSLMKGSMPTPTSIFARKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNPSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSHQCNLNNSFINPQDPPFGSMSMASFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMHPSVQTQANINMQLNIKSEHGGTQLMHLSQQHTGGQTINNSPAGHLPRIPSTIRKPIISGSITRGNGAADNSQGPGYNLISPASSMVNFPMNQTTELSNNFSLQSDSMVSTLTCKGVFQEEISSDLKGSGGLMSSYDVYNDLHLPKSHDWDSQNVSSLAFGTSHHGNFIQDSFDISSSTLIHHGFPSSQTNGQNQNSSVVGKTIFSFSDGTQPENAQSNGQNSLLNPVEVKPQRIPDASYQTDLLSENFGQDELLSVFLKQQQQGGDNGSRYQTENICV 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10055481 10060730 + Maker00024851 Lcy12g0777 648840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0777 671 PIRSF RR_ARR_type-B 15 665 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy12g0777 671 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 190 210 - -
Lcy12g0777 671 FunFam Two-component response regulator 33 170 - -
Lcy12g0777 671 Gene3D - 33 165 - -
Lcy12g0777 671 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Lcy12g0777 671 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 174 189 - -
Lcy12g0777 671 FunFam Two-component response regulator 209 272 - -
Lcy12g0777 671 Gene3D - 210 272 - -
Lcy12g0777 671 SMART REC_2 33 145 IPR001789 GO:0000160(InterPro)
Lcy12g0777 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 366 IPR045279 GO:0009736(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 597 619 - -
Lcy12g0777 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677(InterPro)
Lcy12g0777 671 MobiDBLite consensus disorder prediction 156 173 - -
Lcy12g0777 671 SUPERFAMILY CheY-like 32 156 IPR011006 -
Lcy12g0777 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Lcy12g0777 671 MobiDBLite consensus disorder prediction 156 210 - -
Lcy12g0777 671 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Lcy12g0777 671 CDD REC_typeB_ARR-like 35 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0777 K14491 - - csv:101210138 1168.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0777 Lcy-Chr12:10055481 Lcy2g0162 Lcy-Chr2:1259169 3.15E-81 dispersed
Lcy13g1722 Lcy-Chr13:36191370 Lcy12g0777 Lcy-Chr12:10055481 1.14E-89 transposed
Lcy3g1781 Lcy-Chr3:45069062 Lcy12g0777 Lcy-Chr12:10055481 1.57E-06 transposed
Lcy11g1369 Lcy-Chr11:37414130 Lcy12g0777 Lcy-Chr12:10055481 6.44E-247 wgd
Lcy12g0777 Lcy-Chr12:10055481 Lcy3g1780 Lcy-Chr3:45056757 1.07E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g113 Blo01g00060 . Bda03g01158 Bda08g00304 Bpe04g01103 . Bma04g01144 Bma05g01022 Cmo08g01225 Cmo17g00339 Cma06g01548 . Car06g01314 Car14g01419 Sed02g1152 Cpe08g00165 Cpe03g01344 Bhi01g01057 Tan10g1051 Cmetu11g1360 Lac11g0905 Hepe05g1404 . Lcy11g1369 Cla06g00448 Cam06g0476 Cec06g0481 Cco06g0479 Clacu06g0463 Cmu06g0463 Cre06g1238 Cone14ag0738 Cone15ag0748 Cone7ag0120 Cone4ag0123 . Csa06g01765 Chy11g01546 . . Blo07g00160 . . Bpe05g00823 Bpe13g00682 . Bma06g01483 . . Cmo14g01636 Cma08g01254 Cma17g00351 Car08g01126 Car17g00322 Cpe12g00300 Cpe17g00047 Bhi12g01899 . . . . . Lcy12g0777 Cla05g00679 Cam05g0746 Cec05g0752 Cco05g0752 Clacu05g0738 Cmu05g0703 Cre05g0777 Lsi09g01466 Csa03g01497 Chy06g00735 Cme11g02055
Vvi7g354 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00504 Cam09g0543 Cec09g0535 Cco09g0531 Clacu09g0545 . Cre09g0522 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01899 . . . . . Lcy12g0777 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 1 198 Response Regulator Gene Family AT1G59940 60.5 4.7e-54 209.1
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G59940 57.9 2.9e-40 163.3
Lcy1g1833 . 11 154 Response Regulator Gene Family AT1G59940 56.3 5.5e-39 159.1
Lcy7g0695 . 9 176 Response Regulator Gene Family AT1G59940 53.0 4.0e-37 152.9
Lcy10g1232 . 2 161 Response Regulator Gene Family AT1G59940 54.0 6.8e-37 152.1
Lcy7g0216 . 16 182 Response Regulator Gene Family AT1G10470 65.3 6.3e-51 198.4
Lcy5g0961 . 61 203 Response Regulator Gene Family AT1G10470 58.7 6.5e-40 161.8
Lcy1g1833 . 17 154 Response Regulator Gene Family AT1G10470 60.9 5.5e-39 158.7
Lcy10g1232 . 18 178 Response Regulator Gene Family AT1G10470 51.2 1.5e-36 150.6
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 11 172 Response Regulator Gene Family AT5G62920 62.4 9.3e-47 184.1
Lcy1g1833 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.2e-40 162.9
Lcy5g0961 . 46 205 Response Regulator Gene Family AT5G62920 52.5 1.1e-39 160.6
Lcy7g0216 . 28 182 Response Regulator Gene Family AT1G19050 59.1 4.5e-42 168.7
Lcy1g1833 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.0e-39 158.3
Lcy5g0961 . 59 205 Response Regulator Gene Family AT1G19050 53.7 3.9e-38 155.6
Lcy1g1833 . 8 268 Response Regulator Gene Family AT2G41310 52.2 8.8e-60 227.6
Lcy5g0961 . 52 207 Response Regulator Gene Family AT2G41310 75.0 9.8e-59 224.2
Lcy10g1232 . 10 160 Response Regulator Gene Family AT2G41310 59.5 1.1e-41 167.5
Lcy7g0216 . 25 155 Response Regulator Gene Family AT2G41310 57.4 1.9e-38 156.8
Lcy9g1560 . 15 163 Response Regulator Gene Family AT2G41310 51.3 1.2e-37 154.1
Lcy1g1833 . 8 268 Response Regulator Gene Family AT3G57040 53.2 1.2e-62 237.3
Lcy5g0961 . 52 209 Response Regulator Gene Family AT3G57040 78.5 4.9e-61 231.9
Lcy7g0695 . 4 168 Response Regulator Gene Family AT3G57040 61.7 4.0e-47 185.7
Lcy10g1232 . 14 190 Response Regulator Gene Family AT3G57040 54.4 4.1e-44 175.6
Lcy7g0216 . 25 155 Response Regulator Gene Family AT3G57040 58.0 2.1e-40 163.3
Lcy9g1560 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.6e-40 162.5
Lcy7g0216 . 25 184 Response Regulator Gene Family AT1G74890 60.6 1.6e-44 176.8
Lcy1g1833 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.6e-39 160.2
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G74890 55.2 1.0e-38 157.5
Lcy2g0621 . 26 169 Response Regulator Gene Family AT1G74890 58.5 1.1e-37 154.1
Lcy5g0961 . 57 205 Response Regulator Gene Family AT2G40670 55.3 9.8e-40 160.6
Lcy7g0216 . 26 156 Response Regulator Gene Family AT2G40670 54.7 3.5e-37 152.1
Lcy1g1833 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 151.0
Lcy5g0961 . 57 205 Response Regulator Gene Family AT3G56380 54.7 2.0e-39 159.5
Lcy7g0216 . 26 156 Response Regulator Gene Family AT3G56380 54.1 6.5e-38 154.5
Lcy1g1833 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.2e-37 152.1
Lcy10g1232 . 10 157 Response Regulator Gene Family AT3G56380 54.0 9.4e-37 150.6
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy3g0037 . 154 291 Response Regulator Gene Family AT5G60100 61.6 2.9e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19251 None None None None Lcy TF