Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0790 ATGTCTCTCTCCATGAAAGCTGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGGTACTGTCGTGATCGTAGCCTGTTTGCGAGTTCTGATAGGGCAAAATCAACGTGCTGCTAACTGCTATGCTCAATGGCTTCATGCTACTGTCTATGGAATTGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATCCATGCAATTCTATGTAACTACAAATATTTCGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCATAATTGGAAGAAAAAAAAGGATGGGAAGACAGTAAAAGAAGCACATGAACATTTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAATCCAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATCGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCTATGAATTCAAATTGTGGTTCTGTCTCTGACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTAATCATGTTTACTCTGTTGGTGAAAATGAACTGTCAGAGCTTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTCGAGTGGGATGAACTTCTTGCGACAGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAGACTTTCATGCTTTGACCAACAGAACCAGGTCCCAATAAATGTGGCCAACAATTTATTGGGGCACGCGTCTTCCTTTAATAACCCAGTTGAGTCAACTGGGAGTGCCAATGGCAATATCAGTTTTACAGGGAGTGGCTATTTGCCGTTAATAAGTGGTCAAACAAATTTGAATGCAGAGAGTAAGCAATCCGTTCCAATTACTTCATTGGACAATTTGTTAAACGATGGATTGCAAAGTCAGGACAGTTTTGGACGATGGATAAACGAAGTCATCACTGACTCTCCTGGTACAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCCATTCACAATTCCCATACTGATCCAACATTAGATCAACGTCAATCTTCCGTTATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACTGGATATTTTCACAATGAGTACGTACATCTGGCAAAGTCCAATATAGTGGTCGTGTGTGGTGATAACAGTGTCAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCACCAGGACTAGTACAGTTATACATGAGCTTAGATGCCCAAAAACCTATTAGTCAAGTTCTGAATTTTGAGTACCGTGCACCACTTTTACTGCCTATAGTTGCTTCAGAACAGATTAACAAGTGGGAAGAGTTTCAAGTTCAAATGCGGCTTGCCCATTTGTTGTTTTCTACATCAAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCATTGCCCTGAGCGATGCCAAGAAACTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAATCAATTAATGAAAATAAAACTCCATTTCCACAAGCAAGAGAGGGTCTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTGCCCGGTCAGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGTACAATATTATTTGTCAAATTGATGGAAAAATTATTTTATATTACCTTGAACCAAGCAGAGAGGTTGACTCTGTACTGCTGTGTTGGGAATTTCCTAGTTTTAAAGTTTACTTTTACTGGAGGGCACTTCTCACCTATTTTACTACAAAAATTTCCTTGTATAGAGAGAAAATGGTAGCTGTTCTTTTATCAGTGGGGGCGAAGCCAAACTTGGTAACTGATCCCTCATCAAAGAACCCTCTGGGATATATGGCTGCAGATCTTGCATCTATGAATGGTTTTGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGATATGAGCTTAGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAATAACCGATGCCATTTGCCCAGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTACCGGACAGCAGCTGATGCGGCAGCACGCATACAAGCTGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGACGCGAAAAAGAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGTAAAGACTTCCTTAATATGCGTCGTCAAGCTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGCAAGATTGTTTGGTCGGTAGGAGTACTTGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGTTTTCGCGGGCTTCAAGTTGCACCTGCTGAAGAAACAGAACAGCAGGAAATTGGCATAGTAGAGGACTTCTATCGTGTATCTCAAAAACAGGCAGAAGAGCGAGTTGAGAGAGCTGTTGTACGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGCAGGATGAAGTTGACCTACGATGAAGCAGAGCTGGAATATGAAGAACTTTCGCATCCTGATATGGAATTGTATCACTGA 3018 41.39 MSLSMKADVQGSLVGSEIHGFHTLQGTVVIVACLRVLIGQNQRAANCYAQWLHATVYGIDLDVKNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSMNSNCGSVSDPSTPWLLSEELDSRANHVYSVGENELSELSDTTTVMNHEQRLHEINTLEWDELLATDEPFKPAMPKGDRLSCFDQQNQVPINVANNLLGHASSFNNPVESTGSANGNISFTGSGYLPLISGQTNLNAESKQSVPITSLDNLLNDGLQSQDSFGRWINEVITDSPGTVIDPAIEPSISSIHNSHTDPTLDQRQSSVMEQIFNITDVSPAWAFSTEKTKILITGYFHNEYVHLAKSNIVVVCGDNSVNVDFVQPGVYRCLVQPHSPGLVQLYMSLDAQKPISQVLNFEYRAPLLLPIVASEQINKWEEFQVQMRLAHLLFSTSKSLSIMSTKLSPIALSDAKKLAVKTSDISDSWIYLLKSINENKTPFPQAREGLLEIILRSRLREWLIERVAEGSKKSTEFDVKGQGVIHLCAILGYTWAIHLFARSGLSINFRDKFGWTALHWAAYYGRYNIICQIDGKIILYYLEPSREVDSVLLCWEFPSFKVYFYWRALLTYFTTKISLYREKMVAVLLSVGAKPNLVTDPSSKNPLGYMAADLASMNGFDGLAAYLSEKALVSHFNDMSLAGNVSGSLETSTITDAICPDSISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTQAIEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKDFLNMRRQAIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPAEETEQQEIGIVEDFYRVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMKLTYDEAELEYEELSHPDMELYH 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10281141 10294008 + Maker00025025 Lcy12g0790 648853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0790 1005 Pfam IPT/TIG domain 403 488 IPR002909 -
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 805 834 - -
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 960 988 - -
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 858 884 - -
Lcy12g0790 1005 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Lcy12g0790 1005 Gene3D Immunoglobulins 396 491 IPR013783 -
Lcy12g0790 1005 Gene3D - 580 755 IPR036770 -
Lcy12g0790 1005 ProSiteProfiles CG-1 DNA-binding domain profile. 63 189 IPR005559 GO:0003677(InterPro)
Lcy12g0790 1005 Pfam IQ calmodulin-binding motif 883 902 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 881 905 - -
Lcy12g0790 1005 SUPERFAMILY E set domains 402 489 IPR014756 -
Lcy12g0790 1005 Gene3D - 859 905 - -
Lcy12g0790 1005 SUPERFAMILY Ankyrin repeat 599 754 IPR036770 -
Lcy12g0790 1005 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 62 652 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy12g0790 1005 SMART CG_1_2 66 184 IPR005559 GO:0003677(InterPro)
Lcy12g0790 1005 Pfam CG-1 domain 70 182 IPR005559 GO:0003677(InterPro)
Lcy12g0790 1005 Coils Coil 972 992 - -
Lcy12g0790 1005 SMART iq_5 880 902 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 SMART iq_5 857 879 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 SMART iq_5 958 980 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 SMART iq_5 804 826 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0790 Lcy-Chr12:10281141 Lcy3g1256 Lcy-Chr3:38305579 7.46E-66 dispersed
Lcy12g0790 Lcy-Chr12:10281141 Lcy4g0249 Lcy-Chr4:3037982 2.69E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19254 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0790 K21596 - csv:101211298 1449.88