Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0790 ATGTCTCTCTCCATGAAAGCTGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGGTACTGTCGTGATCGTAGCCTGTTTGCGAGTTCTGATAGGGCAAAATCAACGTGCTGCTAACTGCTATGCTCAATGGCTTCATGCTACTGTCTATGGAATTGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATCCATGCAATTCTATGTAACTACAAATATTTCGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCATAATTGGAAGAAAAAAAAGGATGGGAAGACAGTAAAAGAAGCACATGAACATTTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAATCCAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATCGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCTATGAATTCAAATTGTGGTTCTGTCTCTGACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTAATCATGTTTACTCTGTTGGTGAAAATGAACTGTCAGAGCTTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTCGAGTGGGATGAACTTCTTGCGACAGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAGACTTTCATGCTTTGACCAACAGAACCAGGTCCCAATAAATGTGGCCAACAATTTATTGGGGCACGCGTCTTCCTTTAATAACCCAGTTGAGTCAACTGGGAGTGCCAATGGCAATATCAGTTTTACAGGGAGTGGCTATTTGCCGTTAATAAGTGGTCAAACAAATTTGAATGCAGAGAGTAAGCAATCCGTTCCAATTACTTCATTGGACAATTTGTTAAACGATGGATTGCAAAGTCAGGACAGTTTTGGACGATGGATAAACGAAGTCATCACTGACTCTCCTGGTACAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCCATTCACAATTCCCATACTGATCCAACATTAGATCAACGTCAATCTTCCGTTATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACTGGATATTTTCACAATGAGTACGTACATCTGGCAAAGTCCAATATAGTGGTCGTGTGTGGTGATAACAGTGTCAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCACCAGGACTAGTACAGTTATACATGAGCTTAGATGCCCAAAAACCTATTAGTCAAGTTCTGAATTTTGAGTACCGTGCACCACTTTTACTGCCTATAGTTGCTTCAGAACAGATTAACAAGTGGGAAGAGTTTCAAGTTCAAATGCGGCTTGCCCATTTGTTGTTTTCTACATCAAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCATTGCCCTGAGCGATGCCAAGAAACTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAATCAATTAATGAAAATAAAACTCCATTTCCACAAGCAAGAGAGGGTCTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTGCCCGGTCAGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGTACAATATTATTTGTCAAATTGATGGAAAAATTATTTTATATTACCTTGAACCAAGCAGAGAGGTTGACTCTGTACTGCTGTGTTGGGAATTTCCTAGTTTTAAAGTTTACTTTTACTGGAGGGCACTTCTCACCTATTTTACTACAAAAATTTCCTTGTATAGAGAGAAAATGGTAGCTGTTCTTTTATCAGTGGGGGCGAAGCCAAACTTGGTAACTGATCCCTCATCAAAGAACCCTCTGGGATATATGGCTGCAGATCTTGCATCTATGAATGGTTTTGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGATATGAGCTTAGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAATAACCGATGCCATTTGCCCAGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTACCGGACAGCAGCTGATGCGGCAGCACGCATACAAGCTGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGACGCGAAAAAGAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGTAAAGACTTCCTTAATATGCGTCGTCAAGCTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGCAAGATTGTTTGGTCGGTAGGAGTACTTGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGTTTTCGCGGGCTTCAAGTTGCACCTGCTGAAGAAACAGAACAGCAGGAAATTGGCATAGTAGAGGACTTCTATCGTGTATCTCAAAAACAGGCAGAAGAGCGAGTTGAGAGAGCTGTTGTACGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGCAGGATGAAGTTGACCTACGATGAAGCAGAGCTGGAATATGAAGAACTTTCGCATCCTGATATGGAATTGTATCACTGA 3018 41.39 MSLSMKADVQGSLVGSEIHGFHTLQGTVVIVACLRVLIGQNQRAANCYAQWLHATVYGIDLDVKNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSMNSNCGSVSDPSTPWLLSEELDSRANHVYSVGENELSELSDTTTVMNHEQRLHEINTLEWDELLATDEPFKPAMPKGDRLSCFDQQNQVPINVANNLLGHASSFNNPVESTGSANGNISFTGSGYLPLISGQTNLNAESKQSVPITSLDNLLNDGLQSQDSFGRWINEVITDSPGTVIDPAIEPSISSIHNSHTDPTLDQRQSSVMEQIFNITDVSPAWAFSTEKTKILITGYFHNEYVHLAKSNIVVVCGDNSVNVDFVQPGVYRCLVQPHSPGLVQLYMSLDAQKPISQVLNFEYRAPLLLPIVASEQINKWEEFQVQMRLAHLLFSTSKSLSIMSTKLSPIALSDAKKLAVKTSDISDSWIYLLKSINENKTPFPQAREGLLEIILRSRLREWLIERVAEGSKKSTEFDVKGQGVIHLCAILGYTWAIHLFARSGLSINFRDKFGWTALHWAAYYGRYNIICQIDGKIILYYLEPSREVDSVLLCWEFPSFKVYFYWRALLTYFTTKISLYREKMVAVLLSVGAKPNLVTDPSSKNPLGYMAADLASMNGFDGLAAYLSEKALVSHFNDMSLAGNVSGSLETSTITDAICPDSISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTQAIEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKDFLNMRRQAIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPAEETEQQEIGIVEDFYRVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMKLTYDEAELEYEELSHPDMELYH 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10281141 10294008 + Maker00025025 Lcy12g0790 648853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0790 1005 Pfam IPT/TIG domain 403 488 IPR002909 -
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 805 834 - -
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 960 988 - -
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 858 884 - -
Lcy12g0790 1005 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Lcy12g0790 1005 Gene3D Immunoglobulins 396 491 IPR013783 -
Lcy12g0790 1005 Gene3D - 580 755 IPR036770 -
Lcy12g0790 1005 ProSiteProfiles CG-1 DNA-binding domain profile. 63 189 IPR005559 GO:0003677(InterPro)
Lcy12g0790 1005 Pfam IQ calmodulin-binding motif 883 902 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 ProSiteProfiles IQ motif profile. 881 905 - -
Lcy12g0790 1005 SUPERFAMILY E set domains 402 489 IPR014756 -
Lcy12g0790 1005 Gene3D - 859 905 - -
Lcy12g0790 1005 SUPERFAMILY Ankyrin repeat 599 754 IPR036770 -
Lcy12g0790 1005 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 62 652 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy12g0790 1005 SMART CG_1_2 66 184 IPR005559 GO:0003677(InterPro)
Lcy12g0790 1005 Pfam CG-1 domain 70 182 IPR005559 GO:0003677(InterPro)
Lcy12g0790 1005 Coils Coil 972 992 - -
Lcy12g0790 1005 SMART iq_5 880 902 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 SMART iq_5 857 879 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 SMART iq_5 958 980 IPR000048 GO:0005515(InterPro)
Lcy12g0790 1005 SMART iq_5 804 826 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0790 K21596 - - csv:101211298 1449.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0790 Lcy-Chr12:10281141 Lcy3g1256 Lcy-Chr3:38305579 7.46E-66 dispersed
Lcy12g0790 Lcy-Chr12:10281141 Lcy4g0249 Lcy-Chr4:3037982 2.69E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19254 None None None None Lcy TF