Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0802 ATGGCATTTTGGTGGACTCTGCTTGTTCTAGGATTTGCTTACGCGATCTGTAGGTTTCTCTTGATGCTCATCCCTCCGAACGTGCCTTCAATTGAAGTTGACGCATCTGACGTTACGGACGACGGGAATCAGACGCAGGAGAATAGCTACATCTATATTCCTCCTAGGGTAAAGACACAACAGCAAGACAAGAAAGTCCAGTGTTACGAGCCTGCAACTATGAAATACTTGGGCTTTTTTCCTGCATTGTCACGAGATGAGGTCAAGGAGCGTGTTGCTTCAGCCAGGAAAGCACAGAAAGAATGGGCCAAAAGTAGCTTCAAGCAAAGGCGTTTGCTTTTACGGATACTTTTGAAGTATATAATTGAACATCAAGAGCTTATTTGCGAGATTTCCTCCCGTGACACTGGAAAAACAATAGTGGATGCTAGTATGGGAGAAATAATGGCGACATGTGAAAAAATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCCGATCATGTGGAAGGGCAACACTTCACAAGAAAGCCCGAGTAGAATTTCATCCCCTTGGAGTTATTGGGGCAATAGTCCCATGGAACTATCCATTCCATAACATTTTCAATCCAGTGCTTGCAGCAGTCTTTGCAGGAAACGGTATTGTAGTTAAGGTTTCAGAACATGCAAGTTGGTCCGGATGCTTCTACATCAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGCTTGGTCGATGTGATAACAGGGTTTGCTGAAACAGGTGAAGCGCTAGTATCTTCAGTAGACAAAATGATATTTGTTGGATCTACTGGTGTGGGTAGGATGATAATGAAAACTGCTGCTGAGACACTTATTCCAGTTACTCTTGAGTTGGGTGGAAAGGACGCATTTATTGTGTGTGAGGATGTAGATTTGGATCATGTTGTAAACGTTGCTCTCAGGGCTTCTTTTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATATTATGTCCACAAGAACATTTACTCTTCATTTGTGGATAAAATATCAGAACGTGTAAAGGCTATTACAGTTGGTCCACCATTAGCTGGGAAATATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTTGTAAATGATGCCTTAGACAGGGGGGCAAAAATTGTTGCTCGTGGAACTTTTGGACACTTACCTGAAGGTGCCGTTGATCAATATTTCCCACCTACCGTTATTGTTGATGTCAACCATACCATGAAGTTGATGCAAGAGGAGGCATTTGGACCTATCCTGCCTATAATGAAATTCAGCACTGATGATGAGGCCGTGAAGCTTGCAAATGATTCAAGATTTGGACTTGGCTGTGCTGTGTTTTCTGGCAGTAAGCAACGTGCCAAGAATATTGCTTCGCAGATACGTTCTGGAAGTGTTGCAATTAATGACTTTGCCACAAATTATTTGTGTCAGTCCTTGCCATTTGGTGGCGTGAAAGAGAGTGGATTCGGTCGATTTGCGGGCATTGAAGGATTACGAGCTTGTTGTCTCGTCAAAGCAGTCGTTGAGGATAGGTGGTGGCCGTACATTCAAACTAAGTATCCCAAGTCTCTTACGTATCCTGTTGCAGACAACGCCTTTGAGTTTCAGATGTCACTCGTTGAAGCAACGTACGGCCTCAGCATATGGGATCAATTAAAAGCATTGGTCAATGTTCTGAAGATGCTGTCCGAGCAAAACACTCCGGCTAAAGATAACTCTGCCATTGGCGATGGAAGTAAGAGAGCGGAGTGA 1812 43.98 MAFWWTLLVLGFAYAICRFLLMLIPPNVPSIEVDASDVTDDGNQTQENSYIYIPPRVKTQQQDKKVQCYEPATMKYLGFFPALSRDEVKERVASARKAQKEWAKSSFKQRRLLLRILLKYIIEHQELICEISSRDTGKTIVDASMGEIMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVLAAVFAGNGIVVKVSEHASWSGCFYIRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKTAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASFTSSGHNCTGAERYYVHKNIYSSFVDKISERVKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVKLANDSRFGLGCAVFSGSKQRAKNIASQIRSGSVAINDFATNYLCQSLPFGGVKESGFGRFAGIEGLRACCLVKAVVEDRWWPYIQTKYPKSLTYPVADNAFEFQMSLVEATYGLSIWDQLKALVNVLKMLSEQNTPAKDNSAIGDGSKRAE 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10447106 10455969 - Maker00024925 Lcy12g0802 648865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0802 603 FunFam aldehyde dehydrogenase 22A1 65 317 - -
Lcy12g0802 603 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 54 528 - -
Lcy12g0802 603 FunFam Aldehyde dehydrogenase A 301 495 - -
Lcy12g0802 603 SUPERFAMILY ALDH-like 51 529 IPR016161 GO:0016491(InterPro)
Lcy12g0802 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491(InterPro)
Lcy12g0802 603 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491(InterPro)
Lcy12g0802 603 CDD ALDH_F15-22 69 531 - -
Lcy12g0802 603 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491(InterPro)
Lcy12g0802 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0802 Lcy-Chr12:10447106 Lcy2g0624 Lcy-Chr2:5328987 6.81E-68 dispersed
Lcy4g2026 Lcy-Chr4:46794618 Lcy12g0802 Lcy-Chr12:10447106 1.64E-49 transposed
Lcy6g0946 Lcy-Chr6:9768399 Lcy12g0802 Lcy-Chr12:10447106 1.92E-42 transposed
Lcy8g2098 Lcy-Chr8:47168691 Lcy12g0802 Lcy-Chr12:10447106 1.35E-38 transposed
Lcy12g0802 Lcy-Chr12:10447106 Lcy13g1208 Lcy-Chr13:28743166 1.46E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0802 - - - 0.0