Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0802 ATGGCATTTTGGTGGACTCTGCTTGTTCTAGGATTTGCTTACGCGATCTGTAGGTTTCTCTTGATGCTCATCCCTCCGAACGTGCCTTCAATTGAAGTTGACGCATCTGACGTTACGGACGACGGGAATCAGACGCAGGAGAATAGCTACATCTATATTCCTCCTAGGGTAAAGACACAACAGCAAGACAAGAAAGTCCAGTGTTACGAGCCTGCAACTATGAAATACTTGGGCTTTTTTCCTGCATTGTCACGAGATGAGGTCAAGGAGCGTGTTGCTTCAGCCAGGAAAGCACAGAAAGAATGGGCCAAAAGTAGCTTCAAGCAAAGGCGTTTGCTTTTACGGATACTTTTGAAGTATATAATTGAACATCAAGAGCTTATTTGCGAGATTTCCTCCCGTGACACTGGAAAAACAATAGTGGATGCTAGTATGGGAGAAATAATGGCGACATGTGAAAAAATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCCGATCATGTGGAAGGGCAACACTTCACAAGAAAGCCCGAGTAGAATTTCATCCCCTTGGAGTTATTGGGGCAATAGTCCCATGGAACTATCCATTCCATAACATTTTCAATCCAGTGCTTGCAGCAGTCTTTGCAGGAAACGGTATTGTAGTTAAGGTTTCAGAACATGCAAGTTGGTCCGGATGCTTCTACATCAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGCTTGGTCGATGTGATAACAGGGTTTGCTGAAACAGGTGAAGCGCTAGTATCTTCAGTAGACAAAATGATATTTGTTGGATCTACTGGTGTGGGTAGGATGATAATGAAAACTGCTGCTGAGACACTTATTCCAGTTACTCTTGAGTTGGGTGGAAAGGACGCATTTATTGTGTGTGAGGATGTAGATTTGGATCATGTTGTAAACGTTGCTCTCAGGGCTTCTTTTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATATTATGTCCACAAGAACATTTACTCTTCATTTGTGGATAAAATATCAGAACGTGTAAAGGCTATTACAGTTGGTCCACCATTAGCTGGGAAATATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTTGTAAATGATGCCTTAGACAGGGGGGCAAAAATTGTTGCTCGTGGAACTTTTGGACACTTACCTGAAGGTGCCGTTGATCAATATTTCCCACCTACCGTTATTGTTGATGTCAACCATACCATGAAGTTGATGCAAGAGGAGGCATTTGGACCTATCCTGCCTATAATGAAATTCAGCACTGATGATGAGGCCGTGAAGCTTGCAAATGATTCAAGATTTGGACTTGGCTGTGCTGTGTTTTCTGGCAGTAAGCAACGTGCCAAGAATATTGCTTCGCAGATACGTTCTGGAAGTGTTGCAATTAATGACTTTGCCACAAATTATTTGTGTCAGTCCTTGCCATTTGGTGGCGTGAAAGAGAGTGGATTCGGTCGATTTGCGGGCATTGAAGGATTACGAGCTTGTTGTCTCGTCAAAGCAGTCGTTGAGGATAGGTGGTGGCCGTACATTCAAACTAAGTATCCCAAGTCTCTTACGTATCCTGTTGCAGACAACGCCTTTGAGTTTCAGATGTCACTCGTTGAAGCAACGTACGGCCTCAGCATATGGGATCAATTAAAAGCATTGGTCAATGTTCTGAAGATGCTGTCCGAGCAAAACACTCCGGCTAAAGATAACTCTGCCATTGGCGATGGAAGTAAGAGAGCGGAGTGA 1812 43.98 MAFWWTLLVLGFAYAICRFLLMLIPPNVPSIEVDASDVTDDGNQTQENSYIYIPPRVKTQQQDKKVQCYEPATMKYLGFFPALSRDEVKERVASARKAQKEWAKSSFKQRRLLLRILLKYIIEHQELICEISSRDTGKTIVDASMGEIMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVLAAVFAGNGIVVKVSEHASWSGCFYIRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKTAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASFTSSGHNCTGAERYYVHKNIYSSFVDKISERVKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVKLANDSRFGLGCAVFSGSKQRAKNIASQIRSGSVAINDFATNYLCQSLPFGGVKESGFGRFAGIEGLRACCLVKAVVEDRWWPYIQTKYPKSLTYPVADNAFEFQMSLVEATYGLSIWDQLKALVNVLKMLSEQNTPAKDNSAIGDGSKRAE 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10447106 10455969 - Maker00024925 Lcy12g0802 648865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0802 603 FunFam aldehyde dehydrogenase 22A1 65 317 - -
Lcy12g0802 603 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 54 528 - -
Lcy12g0802 603 FunFam Aldehyde dehydrogenase A 301 495 - -
Lcy12g0802 603 SUPERFAMILY ALDH-like 51 529 IPR016161 GO:0016491(InterPro)
Lcy12g0802 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491(InterPro)
Lcy12g0802 603 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491(InterPro)
Lcy12g0802 603 CDD ALDH_F15-22 69 531 - -
Lcy12g0802 603 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491(InterPro)
Lcy12g0802 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0802 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0802 Lcy-Chr12:10447106 Lcy2g0624 Lcy-Chr2:5328987 6.81E-68 dispersed
Lcy4g2026 Lcy-Chr4:46794618 Lcy12g0802 Lcy-Chr12:10447106 1.64E-49 transposed
Lcy6g0946 Lcy-Chr6:9768399 Lcy12g0802 Lcy-Chr12:10447106 1.92E-42 transposed
Lcy8g2098 Lcy-Chr8:47168691 Lcy12g0802 Lcy-Chr12:10447106 1.35E-38 transposed
Lcy12g0802 Lcy-Chr12:10447106 Lcy13g1208 Lcy-Chr13:28743166 1.46E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g75 . Blo12g00082 Bda03g01176 . Bpe04g01114 . Bma04g01129 . Cmo08g01242 Cmo17g00356 . . . . . . . . . . . . . . Cla06g00431 Cam06g0457 Cec06g0463 Cco06g0462 Clacu06g0444 Cmu06g0445 Cre06g1221 Cone14ag0722 Cone15ag0731 . . . Csa06g01741 Chy11g01565 . . . . . . . . . Sed04g3106 . . Cma08g01274 Cma17g00366 Car08g01144 Car17g00339 Cpe12g00317 Cpe17g00066 Bhi12g01925 Tan06g2751 Cmetu11g1721 Lac11g0932 Hepe03g0048 . Lcy12g0802 . . . . . . . . . . Cme11g02077
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007085 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37