Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0804 ATGGCTCTGAGCTTGTCCTGCCATGCCGCTCTTCACATTCAACATCAAGTGGCTCCAAAAAACAGCAAGAACCTCGACAATGTGAGAAACCTCGTAAAACGAATTGGAATTGCTTCAGTTCAGTCTTCTCCTCTTCAATCCCTCCAAAATGGCAACTGGGTCAAGCTTATTTGTGGTGCAAGTTTCGAGGATGTGGTTGATATTAGGAATCTCTCTCTTGTTTACACCCTTGCTGGTGTTGATTGTATTGATTGTGCTGCTGATGCATCGGTTGTTAGTGCGGTGAATGAGGGAATTCAAGCAGCTAGAGGGATTGTTGGCGTTCGTAAGCCTTGGGTGATGATTAGTGTCAATGATGACCAAGATCTTCACTTCCGTAAAGCTGAGTTTGATCCTGAGAATTGTCCAATTGACTGTTCAAGGCCTTGTGAAAATGTTTGCCCTGCTAATGCAATCTCACTACAGGAAGAAACAATGAATGAGCTTTCAGAAGTGGCCAGTTTATCTGGAGTATTGAAGGGCGGAGTAATCACGGAGCGCTGTTATGGTTGTGGTCGTTGCTTTCCAGTCTGTCCATATGATAAAATAAAGCTGGCCACATATGTAAGAGATGCAGCTACTACTGCTAAACTTATAAAACGGGGCGACGTCGATGCTTTGGAGATTCACACCAATGGAAGGCAAACCACTCCTTTTCAAGAACTTTGGGATAAATTAGGGGACTCATCCAAATATCTAAGGCTAGTTGCAGTAAGCCTACCTAATATTGGGGATTTAACAGTATCGACAATGAAAATGATGTACTCGATGATGGAATCACAGCTCCATTGTTTGAACTTATGGCAGTTAGATGGACGCCCGATGAGTGGAGATATTGGACGAGGTGCCACAAGGGAAACAATTGCTTTTGCTGCTCAGTTAGCTCTTTCCAGTGGTCGTCCTCCCGGCTTCCTTCAACTGGCTGGTGGCACAAATTTTCATACAGTTGATGGCTTGAAGAAAGAGAGATTTTTTCAATCCACATCGCCAAATTCATTACACGCTTTGATCGGTGGTATTGCTTATGGGGGCTATGCGCGGAAAATAGTTGGAAGGGTCTTGAATTCAATGCAAACACATAATGGAGATGCCAATATTGAAGACTATCCAGACTATCTCCTGGCTGCACTTGTGGAAGCCTTGACTTTGGTGGGAACTGTCAAATGTTATGATCCTTCTCTAATCAGCTCAGCAAAAGTTAACTGA 1245 43.69 MALSLSCHAALHIQHQVAPKNSKNLDNVRNLVKRIGIASVQSSPLQSLQNGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIQAARGIVGVRKPWVMISVNDDQDLHFRKAEFDPENCPIDCSRPCENVCPANAISLQEETMNELSEVASLSGVLKGGVITERCYGCGRCFPVCPYDKIKLATYVRDAATTAKLIKRGDVDALEIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTVSTMKMMYSMMESQLHCLNLWQLDGRPMSGDIGRGATRETIAFAAQLALSSGRPPGFLQLAGGTNFHTVDGLKKERFFQSTSPNSLHALIGGIAYGGYARKIVGRVLNSMQTHNGDANIEDYPDYLLAALVEALTLVGTVKCYDPSLISSAKVN 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10485161 10488683 + Maker00024812 Lcy12g0804 648867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0804 414 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 126 157 IPR017896 -
Lcy12g0804 414 SUPERFAMILY 4Fe-4S ferredoxins 119 205 - -
Lcy12g0804 414 Pfam 4Fe-4S dicluster domain 137 194 IPR017896 -
Lcy12g0804 414 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 181 192 IPR017900 -
Lcy12g0804 414 Gene3D - 117 235 - -
Lcy12g0804 414 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 172 201 IPR017896 -
Lcy12g0804 414 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 40 294 IPR013283 GO:0000054(PANTHER)|GO:0005506(PANTHER)|GO:0005524(PANTHER)|GO:0006413(PANTHER)|GO:0006415(PANTHER)|GO:0043024(PANTHER)
Lcy12g0804 414 Pfam Iron-Sulfur binding protein C terminal 211 398 IPR021039 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0804 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g65 . . Bda03g01182 . Bpe04g01115 . Bma04g01126 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0721 . . . . Csa06g01740 Chy11g01566 . . . . . . . . . Sed04g3104 . . . Cma17g00367 . Car17g00340 . . Bhi12g01926 Tan06g2753 Cmetu11g0714 . . . Lcy12g0804 . . . . . . . Lsi09g01487 . . Cme11g02078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 35