Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0852 ATGGGAACTCCACCAGCAGAGGAGCTTCTCAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCTGATTCGAATACAGACCACCAAATCCACCATCATCACCATCACCATCAGCGCTCTCAATCGATATCGCCTCAGCGTTCTAGATTTGCTACGGCTCGGAGGAGAGGCGCCGCTGCTGGAGGTTTAGACGGCGCCGCCGCGGCGTGGAAGAAAGGCTCTTCCTCCTTTCGACATTCTTCTCCACTTCAGAGAGAGAGTAGGACTCGTGACCCTTTCAATGCCGCCGCCGGAGTCGGAACCGCCGCCGGCTCTGGCCCCGCCGCTGTCAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAAATATCGCATAATTTATTGGAACCGAGCCGCTGAAATTGTGTATGGATATTCTGCGGCAGAGGCTCTTGGCCAGGACGCCGTTGGACTTCTAGTAGATCCCGAGGACTTTGCCATTGCCAATGACGTAATTCATCGTGTCATGGCGGGGGAGAATTGGACTGGTCACTTCCCTGTAAAGAACAAAATGGGGCAGAAATTTATAGTTGTTGCCACTAACTCTCCGTTCTACGATGATGGCACATTGGTCGGGATTATCTGTGTATCGAGCGATTCACGGCCGTTTCAAGAATTGAAGATTCCTTTAGCAGCAGGTTCTAAACAGCAGGATGCAGATTCAAGCATGCTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAATTATCGAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACCGGAGAAAACAGCTCGGATCGTGAAGGTGGCAGTGGAGATAGTTATCCATCTGATCATGGCTTTCCGGATGGAGTTCTTTGTGACCATCGGGAGGACGCAAATTCGAGTGGAGCTAGCACGCCTCGAGGAGATTCCACAACTCATGGTGCTTTTTCCCAGGTTGAAGAGAAGTTATCTGGCAAACTGATCAGGGATTCTGGTGATGAGATTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCGAAAGCAGAAGAGTGGATTGCTAAGAAAGGGTTATCATGGCCGTGGAAAGGGACCGAGCATGAAGGAGGATCTGAAGCAAGGGCAGCCCGTTTTGTTTGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTTCTCTTCATCTGGGAAACCAGAAATGCAGCAAAACGATGGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCCTGGTCATCGTTTAATGTTAACAGCACTAGCAGTGCCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAGGTTGACACGGAAACAGACTGCTTGGATTATGAAATCCTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTTTATCATGCGCTGTGGTATGGATCAGATGTTGCGGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCTTGATGAAAAAGCTTAGGCACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCGCCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGGTTTGTTCCTGACCACCATTCTTGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGGGGAATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCTTCGAACCTGTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGTCTTAAGCATGAGACTTATCTAACAACTAAGACCGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTCGGAGTCATATTATGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTAATTGGGGCTGTTGGATTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCTCAATGGGCTTCTATAATTGAAAGCTGCTGGCACAGCGAACCTGCAAACCGGCCATCATTCCAGGTTCTGATAGAAAGGCTTAGAGAGCTGCAGAGGAAGTTTGCTATTCAATTACAGGCAGCTCGTTCTGGTGGAGATAGTACTCCTCAAAAGGAAACATGA 2376 47.05 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNTDHQIHHHHHHHQRSQSISPQRSRFATARRRGAAAGGLDGAAAAWKKGSSSFRHSSPLQRESRTRDPFNAAAGVGTAAGSGPAAVNFTNKQYLNILQSMGQSVHIFDLKYRIIYWNRAAEIVYGYSAAEALGQDAVGLLVDPEDFAIANDVIHRVMAGENWTGHFPVKNKMGQKFIVVATNSPFYDDGTLVGIICVSSDSRPFQELKIPLAAGSKQQDADSSMLRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSSDREGGSGDSYPSDHGFPDGVLCDHREDANSSGASTPRGDSTTHGAFSQVEEKLSGKLIRDSGDEIKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEHEGGSEARAARFVWPWLQNDQEAEPANHKSFSSSGKPEMQQNDGHRAVNNEASGSWSSFNVNSTSSASSCGSTSSSAVNKVDTETDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRFVPDHHSCGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQVLIERLRELQRKFAIQLQAARSGGDSTPQKET 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11767451 11773189 + Maker00024778 Lcy12g0852 648915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0852 791 NCBIfam PAS domain S-box protein 130 239 IPR000014 -
Lcy12g0852 791 ProSiteProfiles PAS repeat profile. 128 199 IPR000014 -
Lcy12g0852 791 FunFam PAS domain-containing protein tyrosine kinase 498 582 - -
Lcy12g0852 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0852 791 Gene3D Transferase(Phosphotransferase) domain 1 592 777 - -
Lcy12g0852 791 Gene3D Phosphorylase Kinase; domain 1 498 582 - -
Lcy12g0852 791 Coils Coil 6 26 - -
Lcy12g0852 791 CDD PAS 139 239 IPR000014 -
Lcy12g0852 791 SMART pas_2 130 197 IPR000014 -
Lcy12g0852 791 MobiDBLite consensus disorder prediction 40 72 - -
Lcy12g0852 791 ProSiteProfiles Protein kinase domain profile. 505 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0852 791 SUPERFAMILY Protein kinase-like (PK-like) 491 763 IPR011009 -
Lcy12g0852 791 Pfam Protein tyrosine and serine/threonine kinase 505 765 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0852 791 Pfam PAS fold 131 237 IPR013767 GO:0006355(InterPro)
Lcy12g0852 791 PANTHER SERINE-THREONINE PROTEIN KINASE 75 768 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy12g0852 791 SMART serkin_6 505 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0852 791 CDD STKc_MAP3K-like 511 765 - -
Lcy12g0852 791 Gene3D PAS domain 140 242 - -
Lcy12g0852 791 FunFam PAS domain-containing protein tyrosine kinase family protein 591 782 - -
Lcy12g0852 791 MobiDBLite consensus disorder prediction 431 460 - -
Lcy12g0852 791 MobiDBLite consensus disorder prediction 340 360 - -
Lcy12g0852 791 MobiDBLite consensus disorder prediction 299 362 - -
Lcy12g0852 791 SUPERFAMILY PYP-like sensor domain (PAS domain) 132 239 IPR035965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0852 Lcy-Chr12:11767451 Lcy1g1276 Lcy-Chr1:12109329 4.80E-98 dispersed
Lcy2g1757 Lcy-Chr2:27980964 Lcy12g0852 Lcy-Chr12:11767451 7.05E-29 dispersed
Lcy12g0852 Lcy-Chr12:11767451 Lcy9g1979 Lcy-Chr9:44705340 1.83E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65515 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0852 - - - 0.0