Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0857 ATGGCAGAAACTACCAGTAGAGAGGAGGCCACATTTGATGTGAAGCGCAAACCTAATCCCTGCTGCGAAGCAAAAGAGGAGCGTTCGAATAAAATTCTGAAGAGGAAGACGACAGTGAAGATGGTGAAAAGTCGAGTGAGAAAGCGACTGTCGTGCCTAAAACTCACCGAAATTCAAGTGGGAACAGAGGAAAGAGAGGGAGAGAAGATGTTGTCGGTGGTGGTCGGCGTGCTGGAGGGCGGCACCGGCGACAAGATGAAGGAGAGAGAGAGTAGGAGGGGGATAGAGAAGAAGATGGAAAAGGGGAAAGGGAATCGGGGTTCCTACTTCGGGCTGGGGGTTTGCATTTCTGAGAGATGTGGGATGCTCCGGGGATTCATGAATCTTCTCTCTCTTTGCTGGAAGCCGTTCGGGCATGCTACTGATAATTTCACCTCCGTTGGAGTCATTGGAACCAATTGCGGTGCCAAAGACTCCAAGGACAGCTTACTCTGGTTCTATGATTACGGTAACTATGCTTCCGGAGATTTCTCCATGGCTGTCGTCCAGGCCAACCAGGTGCTTGAGGACCAGAGCCACATTCAATCTGGCCCTTTTGGTACCTTCCTCGGAATCTATGACGGCCACGGCGGCCCCGACGCCGCTCGATTCGTCTGCGACAACTTGTTTACGCGTTTTCAAGGTTCCTCGTTTTCCGCTCTAACTTGTTTACTTATCGCCATTCTTCCTCTTCTCCTCTACTTTTTAACGGTTCAGTCTTTATCTCCAATTTCAGACGAAGAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCAAACAGAGGAAGGGTTCACAGCCGTCGTCTCAGAGTTGTGGAATACTCGACCTCAGATAGCAACAGTTGGGACGTGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACGTGGCGAGTCTTGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACCGGAGAGATTGCTGCCATTCAGTTATCAACTGAGCACAATGCAAACCTTGAGGATATCAGGCATGAATTAAGAGATATGCATCCAAACGATCCTCAAATTGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATATGAAACATGCTCGGTATAATACTGACAGAATCAATGCTAAATTTAGACTTCCTGAACCGATGAATATGCCTATATTGACTGCTGTACCTACGATTATTGCTCATCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACATCTAACCAATGAAAAAGCAGTGGATATTGTCCATAATCATCCTCGTGCAGGAAGTGCAAAAAGGCTCGTGAAGGCTGCCCTTCAAGAAGCAGCTAGAAAACGAGAGATGCGGTACTCAGATCTCCGAAAGATCGATAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGACCTTATATCCAGAAGCAACGTCCTCCTAGATCAGCCATTATCAGTCCGAAGTGCCCTTGATCATTGA 1590 46.79 MAETTSREEATFDVKRKPNPCCEAKEERSNKILKRKTTVKMVKSRVRKRLSCLKLTEIQVGTEEREGEKMLSVVVGVLEGGTGDKMKERESRRGIEKKMEKGKGNRGSYFGLGVCISERCGMLRGFMNLLSLCWKPFGHATDNFTSVGVIGTNCGAKDSKDSLLWFYDYGNYASGDFSMAVVQANQVLEDQSHIQSGPFGTFLGIYDGHGGPDAARFVCDNLFTRFQGSSFSALTCLLIAILPLLLYFLTVQSLSPISDEERGVVTRETILNAFRQTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYVASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEDIRHELRDMHPNDPQIVVQRHGVWRVKGIIQVSRSIGDVYMKHARYNTDRINAKFRLPEPMNMPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVDIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSALDH 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11843620 11849152 + Maker00024962 Lcy12g0857 648920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0857 529 SUPERFAMILY PP2C-like 185 506 IPR036457 -
Lcy12g0857 529 Pfam Protein phosphatase 2C 237 472 IPR001932 -
Lcy12g0857 529 ProSitePatterns PPM-type phosphatase domain signature. 202 210 IPR000222 GO:0043169(InterPro)
Lcy12g0857 529 ProSiteProfiles PPM-type phosphatase domain profile. 176 505 IPR001932 -
Lcy12g0857 529 SMART PP2C_4 170 503 IPR001932 -
Lcy12g0857 529 FunFam Probable protein phosphatase 2C 42 167 513 - -
Lcy12g0857 529 CDD PP2Cc 177 505 IPR001932 -
Lcy12g0857 529 PANTHER PROTEIN PHOSPHATASE 101 504 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy12g0857 529 Gene3D - 168 514 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0857 Lcy-Chr12:11843620 Lcy8g1268 Lcy-Chr8:39272682 2.52E-138 dispersed
Lcy10g1083 Lcy-Chr10:33045757 Lcy12g0857 Lcy-Chr12:11843620 6.50E-12 transposed
Lcy12g0857 Lcy-Chr12:11843620 Lcy2g1443 Lcy-Chr2:17734902 2.20E-08 wgd
Lcy12g0857 Lcy-Chr12:11843620 Lcy2g2311 Lcy-Chr2:48436680 2.61E-08 wgd
Lcy12g0857 Lcy-Chr12:11843620 Lcy4g1251 Lcy-Chr4:28606587 9.33E-08 wgd
Lcy12g0857 Lcy-Chr12:11843620 Lcy5g0825 Lcy-Chr5:13058564 1.80E-06 wgd
Lcy12g0857 Lcy-Chr12:11843620 Lcy5g0598 Lcy-Chr5:6873031 9.53E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0857 K01102 - csv:101207284 700.279