Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0860 ATGGCGTCATCTGTTCTTTCGAACTCCGATCGCGCGCGGGAGTCTTCGAGGAAGCAAAGGAAGAAGAAAAACCACGGCAACAGAGATCATCATCAAAACCAGAACCATATCAAATGGAAATCTCAAGTTCAGCAAGAAATTTACTCCTCCAAACTGGTACGAGCATTGAATCAAGTGAGGCTCAGTCCTTCCAATGAGGCGCCGCGCCGCGGTAGGGCCGTACGTGAGGCCGCCGATAGAGTCCTCGCCGTCGCCGCCAAGGGGAGAACCAGGTGGAGTCGAGCCATCTTAACGAACAGGCTGAAGCTCAAGTTCAGGAAGCCGAAGAGACAAAGAGCATCCACCGCCGGAAACAGCCGTCCAAAGAAACCTAGAGTCAGCGTTTTGCGGTTGAAGGGGAAGTCATTACCGGCGGTGCAACGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCTGGTTGCCGGAAAGAACCATTGCCGGTTATCCTGGAAGAGGCGACCGATTACATAGCTGCTCTTGAAATGCAAGTTCGAGCTATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGTTGCAGGCTCTAGTTCCGCTCCTCCAAGCTGA 606 53.47 MASSVLSNSDRARESSRKQRKKKNHGNRDHHQNQNHIKWKSQVQQEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRASTAGNSRPKKPRVSVLRLKGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSVAGSSSAPPS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11865896 11866501 + Maker00024719 Lcy12g0860 648923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0860 201 MobiDBLite consensus disorder prediction 106 125 - -
Lcy12g0860 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 189 IPR036638 GO:0046983(InterPro)
Lcy12g0860 201 CDD bHLH_AtIBH1_like 128 183 IPR044549 GO:0006355(InterPro)
Lcy12g0860 201 MobiDBLite consensus disorder prediction 1 41 - -
Lcy12g0860 201 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 36 186 IPR044660 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1331 Lcy-Chr11:36952604 Lcy12g0860 Lcy-Chr12:11865896 1.07E-69 dispersed
Lcy12g0860 Lcy-Chr12:11865896 Lcy4g1776 Lcy-Chr4:43818474 1.29E-34 dispersed
Lcy12g0860 Lcy-Chr12:11865896 Lcy2g2346 Lcy-Chr2:49380921 1.38E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0860 - - - 0.0