Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0862 ATGGGAAATTCTGGTATGCTATTCTCCGATCCGATTCCAAGTGGCATGTTCGATTTCCCACTGGACTCCACTGAGTATTCTTCCTTTAAGCCCTCCACCTTCTCCGATTTGTTGGCCATCCAAGATTACAATCCTTCTTTATTCGACCTCTTCTCTCCACCGTCTCTTCCTCCGCCGCTGCCTGAATCCTCTGAGGTTTTGAATACTCCTCCCACTCCCAATTCCTCCTCCGTCTCCTGCTCCTCCAACGAAAGACCCTTGGACGCTGATGAAGTCGATCGGGATAACTCGCCTTTCAACAAACAGTTGAAAGTGAAAAAGAAGAATCAAAAAAGGGCAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTGGACGACGGTTACAGATGGAGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCGAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAGAAGCGAGTCGAACGATCCTCCGACGACCCTTCCACCGTCGTCACCACCTACGAAGGCCAACACACCCACCAAAGCCCAATCATGCCACGTGGAGCCCTCTCCTCATCCATCTCCCCCGCCGCCGCCGCCTTCACCTCCACGCCGCCGCTTGTTTTCCCACAGTCGCAATACCCCCACCACCACCAACAGTACACGTACACTCCGGCGCCGCCCATGGGATTTGATCCGGTGTTCCATAGCTTGGGAGAAGAACGGCGTCGTATCGGCGGATCCTCTTCGAATTCCGATTCTTTCAAAGACCATGGGCTTCTACAAGATATGATCGTACCCTCCTCCTCCTCCTTACACATCCCCAAAGAAGAGTAA 855 52.16 MGNSGMLFSDPIPSGMFDFPLDSTEYSSFKPSTFSDLLAIQDYNPSLFDLFSPPSLPPPLPESSEVLNTPPTPNSSSVSCSSNERPLDADEVDRDNSPFNKQLKVKKKNQKRAREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSTVVTTYEGQHTHQSPIMPRGALSSSISPAAAAFTSTPPLVFPQSQYPHHHQQYTYTPAPPMGFDPVFHSLGEERRRIGGSSSNSDSFKDHGLLQDMIVPSSSSLHIPKEE 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11979788 11981268 + Maker00024714 Lcy12g0862 648925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0862 284 SMART WRKY_cls 129 188 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0862 284 MobiDBLite consensus disorder prediction 166 196 - -
Lcy12g0862 284 FunFam WRKY transcription factor 57 115 189 - -
Lcy12g0862 284 MobiDBLite consensus disorder prediction 54 112 - -
Lcy12g0862 284 MobiDBLite consensus disorder prediction 86 102 - -
Lcy12g0862 284 Pfam WRKY DNA -binding domain 130 187 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0862 284 MobiDBLite consensus disorder prediction 67 84 - -
Lcy12g0862 284 SUPERFAMILY WRKY DNA-binding domain 121 189 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0862 284 Gene3D WRKY domain 114 190 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0862 284 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 202 IPR044810 GO:0003700(InterPro)
Lcy12g0862 284 ProSiteProfiles WRKY domain profile. 124 189 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0862 284 MobiDBLite consensus disorder prediction 172 196 - -
Lcy12g0862 284 MobiDBLite consensus disorder prediction 240 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0367 Lcy-Chr12:4467580 Lcy12g0862 Lcy-Chr12:11979788 6.53E-53 dispersed
Lcy12g0862 Lcy-Chr12:11979788 Lcy3g1824 Lcy-Chr3:45430483 1.43E-50 dispersed
Lcy8g0340 Lcy-Chr8:10382139 Lcy12g0862 Lcy-Chr12:11979788 1.26E-10 dispersed
Lcy11g1329 Lcy-Chr11:36917052 Lcy12g0862 Lcy-Chr12:11979788 8.56E-72 transposed
Lcy13g1663 Lcy-Chr13:35563246 Lcy12g0862 Lcy-Chr12:11979788 3.91E-47 transposed
Lcy13g2200 Lcy-Chr13:40909480 Lcy12g0862 Lcy-Chr12:11979788 3.62E-31 transposed
Lcy1g1461 Lcy-Chr1:14197233 Lcy12g0862 Lcy-Chr12:11979788 4.14E-24 transposed
Lcy12g0862 Lcy-Chr12:11979788 Lcy6g1706 Lcy-Chr6:32737111 2.99E-28 wgd
Lcy12g0862 Lcy-Chr12:11979788 Lcy8g0308 Lcy-Chr8:9337545 2.23E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19255 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0862 - - - 0.0