Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0864 ATGGAGGAGGGAACGAAAACCAGCCACCGTTCGGCACGCCCCCTATCTGCCCAGAGGCAGAAGCCATCATCTTCTCTTGGGTCCAAACTGCCATCGCCGAAGACCCCCGAATGGCGGCGTCTTTGCTTCGACTCCATTTCCATGACTGCTTTGTCAATGAAAGTCATTGTGTTTTTCCTGTTTCTTTTCATTGCATTGATAGCTCTGATGAATATGAACGGAATTTCTTATCTCGTGCAGGGGTGCGACGCTTCGGTGTTGTTGGATGACAATGACAACTTTGTTGGTGAAAAAACTGCAGCTCCAAATGTGAACTCGCTGAGGGGATTTGAAGTGATTGATGCCATAAAATCTGAGATCGAATCTGTTTGCCCACAGACAGTTTCATGTGCCGACATTCTTGCAATTGCGGCCAGAGACTCTGTTGTACTTTCAGGAGGACCCGTTTGGAAGGTGGAATTTGGAAGAGGAGACAGCCTAAGTGCCAGCAAAGCAGCAGCACAAAACAACATCCCTGCCCCAAACTCCACTGTGGCCATTCTTGTTTCTAAGTTCCAGAACCTTGGCCTCTCTCTCAGAGATATGGTTGCTCTCTCAGGGGCACACACACTGGGACGAGCCCGATGTGTTACATTCAGTTCTAGGCTGCAAGCCAACGGGAACAACCCCAACGAAGGAGCAAACCAGGAGTTCATTGAGTCGCTAAAACAACTCTGCTCGGAATCTGGTAGCAGCTCAACATTGGCACAGCTCGACCTTGTAACCCCTGTGACGTTTGACAATCAGTATTACATCAATCTTCTCTGTGGAGAGGGGTTGCTCCAGTCTGATCAGGTTCTCGTAACTGATGATTACCAGACGAAAGAAATAGTCGAAACCTACGCTGTAGACCCGATTGCCTTCTTTGAAGACTTCAAGCAGTCAATGGTGAGAATGGGAAGCCTCAAACCACCCACTGGAACACAGACCATGATCCGAACTAACTGTCGAACCGTAAGCTAG 1002 48.7 MEEGTKTSHRSARPLSAQRQKPSSSLGSKLPSPKTPEWRRLCFDSISMTALSMKVIVFFLFLFIALIALMNMNGISYLVQGCDASVLLDDNDNFVGEKTAAPNVNSLRGFEVIDAIKSEIESVCPQTVSCADILAIAARDSVVLSGGPVWKVEFGRGDSLSASKAAAQNNIPAPNSTVAILVSKFQNLGLSLRDMVALSGAHTLGRARCVTFSSRLQANGNNPNEGANQEFIESLKQLCSESGSSSTLAQLDLVTPVTFDNQYYINLLCGEGLLQSDQVLVTDDYQTKEIVETYAVDPIAFFEDFKQSMVRMGSLKPPTGTQTMIRTNCRTVS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11985169 11986342 + Maker00024815 Lcy12g0864 648927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0864 333 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 Pfam Peroxidase 77 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Lcy12g0864 333 Gene3D Peroxidase, domain 2 172 313 - -
Lcy12g0864 333 MobiDBLite consensus disorder prediction 1 34 - -
Lcy12g0864 333 MobiDBLite consensus disorder prediction 10 31 - -
Lcy12g0864 333 PANTHER PEROXIDASE 72-RELATED 78 332 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 Gene3D - 78 332 - -
Lcy12g0864 333 FunFam Peroxidase 172 312 - -
Lcy12g0864 333 ProSiteProfiles Plant heme peroxidase family profile. 78 333 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 SUPERFAMILY Heme-dependent peroxidases 78 332 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g0864 333 CDD secretory_peroxidase 79 332 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0864 Lcy-Chr12:11985169 Lcy6g0931 Lcy-Chr6:9470773 1.31E-85 dispersed
Lcy12g0864 Lcy-Chr12:11985169 Lcy7g1449 Lcy-Chr7:24593541 3.89E-64 wgd
Lcy12g0864 Lcy-Chr12:11985169 Lcy7g1485 Lcy-Chr7:25733852 1.09E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0864 K00430 - csv:101205763 454.136