Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0865 ATGGGAGCTGCCGGGGGATTCCGTCCAATTCCTGCTGCTGGCGGTGGTTTTGGCTCCAGTTTCCAGCCGCCACCTGTTGCAGGGCAGAAACGGGGGTACCCTTTCTCCGGCCGTGGAAGTTCTCCAGATCATCCGGATGGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAGCCACAGAAGAAGATACATGTGGTACATTCTCTTATGATATGAGAAAGTCTGGATGTGCTCCTATAGATGAGATGTTTTCACATTCTGTTGAAACAAGAGACAAGGTTCTCATTGAAATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCCTTGATAAAGGATAAGAGAACAGGCCAACAACAAGGTTATGAGAGGCTCGAAGAAATCGTGAGCTCGTCTCAGTTTGTTTTTGCAACAAGTTTGGTGCTTGTTGGTTTTCGTTGCGATCCTAACTTTTTGTCCATCATGTCAAACAAGAAGAAGACAAGGCATGTAAACCTGCTATAA 522 45.59 MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRTGQQQGYERLEEIVSSSQFVFATSLVLVGFRCDPNFLSIMSNKKKTRHVNLL 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11997852 12002031 - Maker00024819 Lcy12g0865 648928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0865 173 Gene3D - 50 128 IPR012677 -
Lcy12g0865 173 MobiDBLite consensus disorder prediction 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0865 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
Vvi7g415 . . . . Bpe03g00494 . . . . . Cma01g00278 Cma14g00942 Car01g00250 . . . . . . . . . . . . . . . . . . . . . Cone11ag0706 . . Chy04g01168 . . . Bda05g00406 . . . . . . Cmo01g00286 . . . . . Cpe02g01533 . Bhi12g01943 . . . . . Lcy12g0865 Cla10g01104 Cam10g1135 Cec10g1168 Cco10g1146 Clacu10g1155 Cmu10g1931 Cre10g1317 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021526 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3