Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0869 ATGGATACTCTGCTTTTCTCCCCTTCTTCTTCAGCTTATCCTGCTCTCAAGCCTCACGCTCTGCTCCTTCGAAATGGCTTCTCAGGAACACGAAGCGCTTTCTATGATCTTCCGAGTGTACGCTCTTCCTTTCGCACTCTCAAGTTACCAACTGGATTCGCAAGAAAATCCACCGTTCTCGCGTCAAAGAAGACCAATGCTAAGACTGACAAGGACGACAGTCATCGCTCCGTACCCAAACCTGATGAGTCTACCGGCTTCTTCCCTGAAGCCGTTCTGCTTAAGGAGACTTGTGGATTTAATTGGCAGAAAAGGGTTGCAGAAGATGGTCAATTCCTCCCCGAATTTGCTGATGCAGAAGAAGAAAAGCTTTATGAATATTTGAACCTACAGTTGGAGAGTGAATCGAAAGTTGAACAAATGCGTCACTATGAGGTAGTATTTTTAATTCACGAGCAGAATGCTGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTAATAATTTTCCATTAGTTTCTGATACAAATAAAAATGCTGTTGCAGACTTTTTAAGGGAGAAGAAAGGGAAGATATGGAGACTGAATGATTGGGGAATGCGAAGACTGGCATACAAGATAAAGAAAGCCAAATATGCACATTACATACTGATGAACTTTGAACTGGAAGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATAAGGATGAAAGAGTAATTCGACATCTTAATGCCCTCGATCTTTTGAGTTTTGCTTCACTTCAGAAAAGTAAATATCAAACAATGGCCATTACCACCGCCGTTGTCAGCCTCCTGATCATCCTCCTTCTGCCAACTCATTGTAATGCAAGTGTCAGAAGAGCCAACCATTCCATTCCCCAAACAGATGTTGATCTTTTAGAATTCCCACTGAACTTAGAGTACCTGGAAGCCGAATTCTTCCTATATGGCTCTCTGGGATATGGCTTGGATAGAGTTGCTCCAAATCTAACCATGGGAGGGCCATCCCCTATTGGTGCTAAAATGGCCAACTTGGGTCCTTTCATCAAGGATATCATATTGCAATTCGCCTATCAGGAAGTTGGTCACTTGAGGGCAATTAAAGCTACAGTGGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCTGCATCATTTGCCAAAGTGATGGATAGAGCATTTGGCCATCGGTTGAAACCACCTTTTGACCCTTATGCTAATGCCTTGAATTTCCTTCTCGCATCATACGTGATTCCTTATGTTGGACTCACTGGGTATGTTGGAGCAAATCCAAAGCTCCAAGCTCCTGTTTCCAAGAAGAAATCCTACAAGCCAATGTTTCAGCTTGTTGCAGGTCTTCTGGGAGTTGAATCGGGTCAAGATGCAGTAATCCGAACGCTACTTTATGAACGTGCAGCGAAAAGGGTTGAACCATATGGAGTAACAGTCGCAGAGTTCACGCAGGTTATTTCAAATCTGCGGAATAAGCTAGGACGTGAAGGTATAAAAGATGAAGGCATTGTAGTACCCAAATACGAGGGTGCTGAGGGTAAGATTTCAGGCAACGTGCTTGCTGGAGATGAGTACTCACTCTCATACGGAAGAACGCCCGAGGAGATTCTAAGGATTGTGTATGGTAGGGGTAATGAACATGTTCCTGGGGGATTCTATCCAGAGGGAGCCAATGGCCACATTGCTAAATCCTATTTAGCGATCATCAAATAA 1728 43.34 MDTLLFSPSSSAYPALKPHALLLRNGFSGTRSAFYDLPSVRSSFRTLKLPTGFARKSTVLASKKTNAKTDKDDSHRSVPKPDESTGFFPEAVLLKETCGFNWQKRVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVEQMRHYEVVFLIHEQNAEEVESVNEKVQGNNFPLVSDTNKNAVADFLREKKGKIWRLNDWGMRRLAYKIKKAKYAHYILMNFELEAKWINEFKSMLDKDERVIRHLNALDLLSFASLQKSKYQTMAITTAVVSLLIILLLPTHCNASVRRANHSIPQTDVDLLEFPLNLEYLEAEFFLYGSLGYGLDRVAPNLTMGGPSPIGAKMANLGPFIKDIILQFAYQEVGHLRAIKATVEGFPRPLLDLSSASFAKVMDRAFGHRLKPPFDPYANALNFLLASYVIPYVGLTGYVGANPKLQAPVSKKKSYKPMFQLVAGLLGVESGQDAVIRTLLYERAAKRVEPYGVTVAEFTQVISNLRNKLGREGIKDEGIVVPKYEGAEGKISGNVLAGDEYSLSYGRTPEEILRIVYGRGNEHVPGGFYPEGANGHIAKSYLAIIK 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12057324 12062298 - Maker00024898 Lcy12g0869 648932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0869 575 PANTHER DESICCATION-LIKE PROTEIN 259 571 IPR052965 -
Lcy12g0869 575 MobiDBLite consensus disorder prediction 65 80 - -
Lcy12g0869 575 Pfam Ribosomal protein S6 180 244 IPR000529 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Lcy12g0869 575 NCBIfam 30S ribosomal protein S6 141 244 IPR000529 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Lcy12g0869 575 Pfam Ferritin-like domain 296 471 - -
Lcy12g0869 575 ProSitePatterns Ribosomal protein S6 signature. 199 208 IPR020815 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Lcy12g0869 575 CDD bS6 143 244 IPR020814 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Lcy12g0869 575 Gene3D - 141 262 IPR014717 -
Lcy12g0869 575 SUPERFAMILY Ribosomal protein S6 141 244 IPR035980 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Lcy12g0869 575 MobiDBLite consensus disorder prediction 64 84 - -
Lcy12g0869 575 Hamap Small ribosomal subunit protein bS6 [rpsF]. 141 250 IPR020814 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0869 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0869 Lcy-Chr12:12057324 Lcy3g1725 Lcy-Chr3:44525890 1.29E-95 dispersed
Lcy10g0663 Lcy-Chr10:19252060 Lcy12g0869 Lcy-Chr12:12057324 1.22E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g35 . . Bda03g01193 . . . Bma04g01115 . . Cmo17g00373 . . . . . . . . . . . . . . Cla06g00412 . Cec06g0441 Cco06g0440 Clacu06g0422 Cmu06g0421 . . Cone15ag0715 . . . Csa06g01854 Chy11g01587 . . . . . . . . . Sed05g1232 . . . Cma17g00384 . . Cpe12g00335 . Bhi12g01952 Tan06g2784 Cmetu11g0368 . . . Lcy12g0869 . . . . . . . Lsi09g01509 . . Cme11g02096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001021 3 2 2 1 0 3 3 3 3 3 2 3 3 2 2 3 3 4 2 3 2 2 4 4 4 2 2 6 2 3 81