Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0884 ATGTTCTTCACGGGCGATTCATCTACTCGTAAGCGAGTTGATTTAGGTGGCCGGAGTTCCAAGGAACGAGATAGGCAGAAACTTCTCGAGCAGACTAGATTGGAGCGAAACCGCCGATTGTCGTTGAGGCAGCAAAATTTTGCTGCTCTCAGAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTGTAGGGTGCGAGAGCAATTTCGTGTTACTTATGGAAAGCATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATAATGCAAAACACACTGGTGACTTTGTGGTTCTTGTAGAGGCCTGTCGGTTACTTCGGCAATTTGTTCAAGACAATGGGGATATGTTGAGCATCTTTGCTGGCAAGGATTATTTATCTAACAAGGGCTTAGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACACCGTAATAGAAACCAATTGCGGAATCAACTTTTTGCTGCACCTGAGAATTCCAACTCACCTGCAACTGTATTGTTAGACGCAATTGTTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGCTACTTTCTGGAAAAAAATGCCTATGCGCTGATTAGGGATATCACTTTGACAGGGAAGGAAAGTACAAATTCACATCCCAACAGTTCAGTGCCTTCTTTAGAACATCTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAGGCCATGCTGTTGCCCACGAAGTGATCTCAATTGGAGTTTCTCGTCCCAAATTCTTACTCTTCCTTTACTTTGGCAGACATTCCCTTACTTAAAGGAGGTGTTCGCTAGATCGGGATTGATTGGACATTACATTCATCAGATGGCATCGTGTGTTCAAAATTATGCAAATGTACTTCCAAAGGATGTAACAGCTGACATTCCTGCCTATGCTTGCCTTCTTGGAAATGTATTAGAAATTTCCAGAACTGCTCTATCTCAGCCTGACTGCTCATCTGAATTGGCTGTAGATCTTGCTTCCATCACAACATTCTTGTTGGAACTACTTCCTTCGATGAAATCACCTCCTAGAGATGTGAAAGAGAGTGCTGCATTGGGTGAGGATGATGTGGTTGTGTCTGATCAAGAAATAGAGGTAGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTCGTACACGTTTTCTCCTGCAGTTGGCAAATGCTTTATTTGGACAAATTTCACGAGTTAGTGGATCTTATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCATGTCACTTTCAATACCCTACCTCTGGAGCAAATTATGACTGTTCTAGCATACAGAACAGAGTTAGTTCCAGTACTTTGGAATTTTATAAAAAGGTGCCATGAGAACCAAAAATGGTCATCCTTTTCAGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCTGTGTACAAACACATGTTGACAATAATTGACAATGAAGAGTTTTATGAGCAGGAGAAGCCACTATCATTGAAGGATATCAGATGCCTAATTATTATTTTAAGACAGGCCCTATGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACCTGCGGCTAGTGCCCATGTTACTAAGAGGCACACTGTTGAATTCATTCAATACAGGGTTACAATTGTTGCTTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGACAATTTACACCACCCAGTGACTTCCATGCTGATGCCGTGAATGATTATTTCATTTCTCAGGCAGTTATAGAAAATACCAGAGCAAATGATATACTTAAGCAAGCTCCATTTTTAGTACCATTTACAAGCAGGGTTAAGATTTTCACTTCACAACTAGCAGCAGCTAGGCAAAGGCATGGATCTCATGCAGTTTTTACCAGAAACCGGTTTAGAATTCGACGAAATCATATATTGGAGGATGCTTTTAGTCAGATGAGTGCATTGTCTGAAGATGATCTTCGAGGATCGATACGTGTGTCATTTGTCAATGAATTTGGAGTTGAGGAGGCTGGAATTGATGGTGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGTGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCACTTGCTGTACCCCAATCCTGGTTCAGGAATGATACACGAGCAACATCTCCAATTTTTTCATTTCCTTGGAGTTCTTTTGGCAAAGGCTATGTTTGAAGGAATTCTTGTTGATATACCTTTTGCAACATTCTTCTTGAGCAAGTTAAAACAGAAGTCTGCACTTACACTAACAGAGTTACTCTGTACTCGAAGAAAGTCTGCACTTGATTCTCAGTACAACTATTTGAATGACTTGCCATCCTTGGATCCGGAATTGTATCGCCACCTTATTTTCTTAAAGCATTTTGAAGGTGACATTTCTGAACTGGAGTTATACTTTGTTATTATAAACAATGAATACGGAGAGCAAACAGAAGAAGAGCTACTCCCTGGAGGAAAAAACCTTCGTGTCACCAGTGAAAATGTCATCACATTCATTCATCTCGTTGCCAATTACCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATTGATATGTTTAATGAGCACGAATTCCAGCTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGACCTACGGACACATACTACTTATTCAAGTGGCTATCATAAAGTAAGTTATATTATACCCCCTTTTCTGTTTGTAGTCCTCTCTTATGTTTCTGTGACAATGGAAACGAAAGTTGGACTTGTATTTTTTATAATTCACTGCTTGGTCAGGTTTGTGACTGGTTGCTCCCGAGGACCGCTTCTTGGCTTTAGATATCTTGAGCCATGTTTTTGCATACAAAGGGCTGCTGGTAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACCTCGGCTACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGCAAGGAGCAACTGGCAAACAAATTGCTCTATGCCATAAATGCAGATGCGGGTTTTGATTTAAGCTGA 3195 40.75 MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALRIQKCFRGRKASEAARCRVREQFRVTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFVVLVEACRLLRQFVQDNGDMLSIFAGKDYLSNKGLVDYRVKKFAYACIQTVHRNRNQLRNQLFAAPENSNSPATVLLDAIVFLLQPELPWVCKIVGYFLEKNAYALIRDITLTGKESTNSHPNSSVPSLEHLLSLLSSHVGERPCCCPRSDLNWSFSSQILTLPLLWQTFPYLKEVFARSGLIGHYIHQMASCVQNYANVLPKDVTADIPAYACLLGNVLEISRTALSQPDCSSELAVDLASITTFLLELLPSMKSPPRDVKESAALGEDDVVVSDQEIEVALNKDVEKQICDAIRTRFLLQLANALFGQISRVSGSYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWNFIKRCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIIILRQALWQLLWVSPTAPSNSAKPAASAHVTKRHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRANDILKQAPFLVPFTSRVKIFTSQLAAARQRHGSHAVFTRNRFRIRRNHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKAMFEGILVDIPFATFFLSKLKQKSALTLTELLCTRRKSALDSQYNYLNDLPSLDPELYRHLIFLKHFEGDISELELYFVIINNEYGEQTEEELLPGGKNLRVTSENVITFIHLVANYRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDSLDVDDLRTHTTYSSGYHKVSYIIPPFLFVVLSYVSVTMETKVGLVFFIIHCLVRFVTGCSRGPLLGFRYLEPCFCIQRAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLLYAINADAGFDLS 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12605898 12619957 + Maker00024985 Lcy12g0884 648947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0884 1064 MobiDBLite consensus disorder prediction 1 26 - -
Lcy12g0884 1064 SMART hect_3 690 1064 IPR000569 GO:0004842(InterPro)
Lcy12g0884 1064 Gene3D Hect, E3 ligase catalytic domain 797 896 - -
Lcy12g0884 1064 CDD HECTc 671 1062 IPR000569 GO:0004842(InterPro)
Lcy12g0884 1064 FunFam Putative Ubiquitin-protein ligase E3C 817 896 - -
Lcy12g0884 1064 Pfam HECT-domain (ubiquitin-transferase) 728 1064 IPR000569 GO:0004842(InterPro)
Lcy12g0884 1064 SUPERFAMILY Hect, E3 ligase catalytic domain 663 1056 IPR035983 GO:0004842(InterPro)
Lcy12g0884 1064 Gene3D Hect, E3 ligase catalytic domains 673 931 - -
Lcy12g0884 1064 MobiDBLite consensus disorder prediction 11 26 - -
Lcy12g0884 1064 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1064 IPR044611 GO:0000209(InterPro)|GO:0000209(PANTHER)|GO:0006511(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Lcy12g0884 1064 ProSiteProfiles HECT domain profile. 692 1064 IPR000569 GO:0004842(InterPro)
Lcy12g0884 1064 ProSiteProfiles IQ motif profile. 45 72 - -
Lcy12g0884 1064 Gene3D Hect, E3 ligase catalytic domain 935 1063 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0884 K10589 - - csv:101218340 1874.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0884 Lcy-Chr12:12605898 Lcy13g1495 Lcy-Chr13:33590914 3.58E-50 dispersed
Lcy5g0353 Lcy-Chr5:3545733 Lcy12g0884 Lcy-Chr12:12605898 1.03E-73 transposed
Lcy12g0884 Lcy-Chr12:12605898 Lcy6g1815 Lcy-Chr6:37198592 1.01E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31