Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0886 ATGAGCTCATTGGCGCATCAACTTTGTTGGTTGAGTAGTTCCCCTCTTTCTTCTACGCGGCTTTCGGTTTCGAGTTGGAAGCGCTTTTCTGCGAAGGAAAGCCGCACGTCTAAAGCGCTTCCGGTAGTTTCAGCTACAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTCGACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTTCTACTCCCATGGATGGCGTCTCCTTCACCCTTGAGGACTTCCATGCCGCTCTTGCAAACTATGACTTCGTTTCTCAACTCGGAACCAAGGTTAAAGGTACTGTATACCGTTCAGATGCTAATGGGGCATTAGTTGACACTACTGCAAAGGGAACTGCATTCTTGCCCACCCAAGAGGCATGCATTCTTCAAATAAGCCATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTTGTAATTATTGCTGAACAGGAAGATGATGATACCTTAATTCTGAGCTTGAGAAGTGTCCAGTATAGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATGTTGTTATCAAGGGTAAGGTTGTTGGTGCAAACAAAGGGGGAGTAATTGTTCTTGTGGAAGGCCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTTCGTCTGAAGTTTGTGGAGGTCGATGAGAAACTATCTCGGCTAATTCTAAGTAACTGCAAGGCAATTGCCAATAGCAAGGTAGAGCAAAGAATTGGATCAGTAGTTACTGGAACTGTGCAGATTCTGAAACCATATGGAGCCTTTATTGACATTGGTGGAATTAATGGCCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGGAACTGTTCTTCAACCAGGAGATATACTAAAGGTCATGATTTTGAGCTATGACCACGAGAGAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTAATCCTGGAGACATGATTCACAATCCAAAGCTTGTTTTTGAGAAGGCAGATGAAATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAGAAATGGCTCGTGTAGACCTTCTCAGATTTCAGCCTGAGGTACTTATGCATTTGCCTTAG 1173 44.16 MSSLAHQLCWLSSSPLSSTRLSVSSWKRFSAKESRTSKALPVVSATASPTPISNAQTKERLRLKQLFKEAYERCCSTPMDGVSFTLEDFHAALANYDFVSQLGTKVKGTVYRSDANGALVDTTAKGTAFLPTQEACILQISHVEEAGIYPGLEEEFVIIAEQEDDDTLILSLRSVQYSLAWERCRQLQAEDVVIKGKVVGANKGGVIVLVEGLRGFVPFSQISAKSTAEELLNKELRLKFVEVDEKLSRLILSNCKAIANSKVEQRIGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIGTVLQPGDILKVMILSYDHERGRVSLSTKKLEPNPGDMIHNPKLVFEKADEMAQIFRQRIAQAEEMARVDLLRFQPEVLMHLP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12693788 12698840 + Maker00025079 Lcy12g0886 648949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0886 390 SUPERFAMILY Nucleic acid-binding proteins 266 345 IPR012340 -
Lcy12g0886 390 SMART S1_6 189 255 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 SMART S1_6 101 173 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 SMART S1_6 266 336 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 FunFam 30S ribosomal protein S1 87 184 - -
Lcy12g0886 390 Coils Coil 353 373 - -
Lcy12g0886 390 CDD S1_RPS1_repeat_hs4 268 336 - -
Lcy12g0886 390 ProSiteProfiles S1 domain profile. 191 255 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 CDD S1_RPS1_repeat_ec2_hs2 191 253 - -
Lcy12g0886 390 Pfam S1 RNA binding domain 265 336 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 Pfam S1 RNA binding domain 190 253 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 ProSiteProfiles S1 domain profile. 268 336 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 Gene3D - 86 185 IPR012340 -
Lcy12g0886 390 Gene3D - 186 264 IPR012340 -
Lcy12g0886 390 FunFam 30S ribosomal protein S1 264 343 - -
Lcy12g0886 390 SUPERFAMILY Nucleic acid-binding proteins 190 256 IPR012340 -
Lcy12g0886 390 SUPERFAMILY Nucleic acid-binding proteins 101 199 IPR012340 -
Lcy12g0886 390 FunFam 30S ribosomal protein S1, chloroplastic 185 261 - -
Lcy12g0886 390 Gene3D - 265 344 IPR012340 -
Lcy12g0886 390 ProSiteProfiles S1 domain profile. 103 173 IPR003029 GO:0003676(InterPro)
Lcy12g0886 390 PANTHER 30S RIBOSOMAL PROTEIN S1 61 373 IPR050437 GO:0003729(PANTHER)|GO:0003735(PANTHER)|GO:0006412(PANTHER)|GO:0009570(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0886 K02945 - - csv:101222582 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1322 Lcy-Chr11:36791924 Lcy12g0886 Lcy-Chr12:12693788 8.24E-190 dispersed
Lcy12g0886 Lcy-Chr12:12693788 Lcy9g0544 Lcy-Chr9:17042456 1.90E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013392 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 1 1 11 0 27