Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0888 ATGAACACACAAGATTCCACAGAAATCCCTAAACCTCGCGAGAGAAGCCTTTCGATGGCGACGACCAACAACCTCCATGGCTCTGGTTCTGTGAATGAAATGCTAATGGAATCGACTAAAGAAGGATCTTCTCATATTAATGCAGAGGCAAAGCCTAATGACACAGAAATAAAAGCACGTGTTGATGCCATGTGGGAGCAAATGAATAAAGGAAATTGGATCTCATATCTTGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATATATCATTGGAAGGAATAGGATCCAAGGTTCTGCAGAACAGTTCTACTGATGATGCTAAGATGCTTGCTGCCAATGCTCTCTCAGCTGTCAGGGATGCTACAGCTACCATTTCGGGCAGGGGGAAAGTTGAGGAGAACTCATTCTTCGAGAGTGGGCGCAAGAAGAAACTTATTATAGGAAAAGAGATGAGAGCTGTACTTGACTTGATTGATGGGATAAATCAAGGAAAGATAATAGTATTGGGAACGTGGATCTGTCTTGAATATTTCTGTGAACCACAAGCGTTATGGAGGAGATTCATTGCCATCAAATATGGAATTGCAAACAATCCGTTCAAGCTTGGAGACCACTCTTTAAATTCTTCCAAGGGCCCATGGAAATCCATACACAAAATGAAGCAATTTGTTTACAACTATACAGATATCAGAGTAGGGAAAGGTGATAAAACCTTGTTCTGGGATGACCACTGGATTGGGAGTGAATCACTAAAATCTTCATACCCCTCCCTTTATAGGCTTTCCCAGAAAAAAGAAGCCCTCATTGTGGATCTTTGGAACTCATCGGAAGAAGCATGGAACCTCCACTTGCGAAGAAATCTCACTGAAGAGGAAATTCTTGAATGGACCTCCTTGTCTCTCACTCTCTCCTCTTTCTCCTTCAAAGAGCTGGAGGACTCTTGGTTTTGGCAACTTGATAGCAATGGATTTTTCTCCTTGGGCTCCCTAATCAAAAAATTGGCCTCCACTGTACAGCCCAACAGAACTGCTTTTTATGATCAATTATGGAAGGGACCTATGCCGAAAAAGGTTAAATTCTTCTTGTGGGAGCTTAGCCATGAGTGTATTAACACTGCTGATTTGGTCCAGAGAAAAAATCCAGGTTTATCCCTCTCCCCACACTGCTGCTGCCTCTGCTATAAGGATTCTGAATCTCTAGCCCATTTATTCAGTAAATGTGATTATGCTGCAGCCTTTTGGGACTTCATCCAACAAGCCTTTGGCTCATGCCGAATTGTCCTCTACTTTCAACAGATCACAGAGATTAGAGACTTCGCCGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCCGTTGATGTAGTCCTGGAACAAATTAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACGAAAAAGGACTGGGGAGAGTTCAAGGAAGAAAATAAGGGTCTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTTGAGAAAGTTTCTTTTTTGCAGCGAACTGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCATTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGA 1668 42.81 MNTQDSTEIPKPRERSLSMATTNNLHGSGSVNEMLMESTKEGSSHINAEAKPNDTEIKARVDAMWEQMNKGNWISYLGMASKKIEPQEKDISLEGIGSKVLQNSSTDDAKMLAANALSAVRDATATISGRGKVEENSFFESGRKKKLIIGKEMRAVLDLIDGINQGKIIVLGTWICLEYFCEPQALWRRFIAIKYGIANNPFKLGDHSLNSSKGPWKSIHKMKQFVYNYTDIRVGKGDKTLFWDDHWIGSESLKSSYPSLYRLSQKKEALIVDLWNSSEEAWNLHLRRNLTEEEILEWTSLSLTLSSFSFKELEDSWFWQLDSNGFFSLGSLIKKLASTVQPNRTAFYDQLWKGPMPKKVKFFLWELSHECINTADLVQRKNPGLSLSPHCCCLCYKDSESLAHLFSKCDYAAAFWDFIQQAFGSCRIVLYFQQITEIRDFAGQNVEIKKFVDADSKEAYEKMKAPATSAVDVVLEQIKKKQKLSVLDKTKKDWGEFKEENKGLEEDLDAYKKSSNQYLEKVSFLQRTDYREFERERDARLALQARRRPDMREEP 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12704267 12711181 + Maker00025095 Lcy12g0888 648951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0888 555 MobiDBLite consensus disorder prediction 1 29 - -
Lcy12g0888 555 ProSiteProfiles Bucentaur C-terminal (BCNT-C) domain profile. 465 546 IPR011421 -
Lcy12g0888 555 Pfam Bucentaur or craniofacial development 469 541 IPR011421 -
Lcy12g0888 555 Coils Coil 501 521 - -
Lcy12g0888 555 PANTHER CRANIOFACIAL DEVELOPMENT PROTEIN 1 72 134 IPR027124 -
Lcy12g0888 555 Pfam zinc-binding in reverse transcriptase 343 416 IPR026960 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0888 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0888 Lcy-Chr12:12704267 Lcy5g1605 Lcy-Chr5:37758037 5.17E-131 dispersed
Lcy12g0888 Lcy-Chr12:12704267 Lcy12g1058 Lcy-Chr12:18313289 1.12E-07 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy12g1224 Lcy-Chr12:25119927 3.50E-74 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy13g0853 Lcy-Chr13:14800366 3.16E-89 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy2g1563 Lcy-Chr2:21165295 8.48E-104 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy2g1418 Lcy-Chr2:17255506 2.61E-50 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy4g1572 Lcy-Chr4:39734787 1.11E-36 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy5g0935 Lcy-Chr5:16267945 1.68E-53 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy9g0556 Lcy-Chr9:17629733 4.45E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g217 Blo01g00027 . . . . . . Bma05g00989 . . . . . . . . . . . . . . . . Cla06g00404 Cam06g0426 Cec06g0434 Cco06g0433 Clacu06g0412 Cmu06g0412 Cre06g1192 Cone14ag0692 Cone15ag0706 . . . . . . . . . . Bpe05g00796 . . . . . . . . . . Cpe12g00342 . Bhi12g01968 . . . . . Lcy12g0888 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007922 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 0 1 36