Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0891 ATGGGATTCCCTTTGTTTATTGTTGCTTTGATGTCCCTTAACCCTGAAAATGATAGAATACAGGCAGTTAGTTGTTCAGATATCGTTGAAGATGCCCATATAGAGCCAACTGCAATAGAGTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGACATTCTATGGATGATGAACATGTCTGCATTGATGATCTATCTACCCACCTCAGATCTATGTTCAAGTGTCCTATGCCTAGTGGTTTCTATGCAGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCCTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTAATTCTATTTCCTTGAAAGATTTGGAGAATTCTCATCGCAAAGCATTCCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCATGTGGGACAACTGCGTTGACAGCATTGGTTCTTGGAAGGCATTTGCTTGTTGCAAACGCTGGTGACTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTTCCAATGTCTCAAGATCACAGGCCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGGTTTGTAGATGATGGGTATGTTAATGGCTATATTTCAGTAACCAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATAGCTCCTCATCACCTCTGATTTCTGAGCCACAAGTGGAACATGCTATTTTAACAAAGGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGATGTCATGTCAAGCCAATATGCTGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCACCAAAGTTCCCAAGAATTAGTCCTAGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCGCCCGGCTGCGTTCCTCAGCAGAGAATATGGAAGTCGTGTAGTCTGACAGAAGAGGCTAGAAGTAGATTGAGCAGCTTGTTAGAAGGAAACTGA 1047 43.74 MGFPLFIVALMSLNPENDRIQAVSCSDIVEDAHIEPTAIEFVPNIRSGSYADIGARHSMDDEHVCIDDLSTHLRSMFKCPMPSGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMLDINSISLKDLENSHRKAFLLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNSSSSPLISEPQVEHAILTKDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVLEALRLNTSDNLTAIVICFSSPGCVPQQRIWKSCSLTEEARSRLSSLLEGN 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12724307 12726944 - Maker00024963 Lcy12g0891 648954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0891 348 CDD PP2Cc 45 316 IPR001932 -
Lcy12g0891 348 FunFam Probable protein phosphatase 2C 22 29 319 - -
Lcy12g0891 348 ProSiteProfiles PPM-type phosphatase domain profile. 46 316 IPR001932 -
Lcy12g0891 348 PANTHER PROTEIN PHOSPHATASE 2C 44 316 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy12g0891 348 SUPERFAMILY PP2C-like 39 318 IPR036457 -
Lcy12g0891 348 Gene3D - 35 319 IPR036457 -
Lcy12g0891 348 SMART PP2C_SIG_2 61 316 IPR001932 -
Lcy12g0891 348 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169(InterPro)
Lcy12g0891 348 SMART PP2C_4 36 314 IPR001932 -
Lcy12g0891 348 Pfam Protein phosphatase 2C 54 308 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0891 Lcy-Chr12:12724307 Lcy6g0081 Lcy-Chr6:773112 1.66E-37 dispersed
Lcy3g1841 Lcy-Chr3:45607696 Lcy12g0891 Lcy-Chr12:12724307 3.17E-129 transposed
Lcy3g1989 Lcy-Chr3:47041257 Lcy12g0891 Lcy-Chr12:12724307 1.73E-31 transposed
Lcy4g2037 Lcy-Chr4:46923958 Lcy12g0891 Lcy-Chr12:12724307 6.96E-62 transposed
Lcy9g1902 Lcy-Chr9:44049366 Lcy12g0891 Lcy-Chr12:12724307 3.60E-28 transposed
Lcy9g2338 Lcy-Chr9:47748218 Lcy12g0891 Lcy-Chr12:12724307 2.13E-87 transposed
Lcy12g0891 Lcy-Chr12:12724307 Lcy5g0825 Lcy-Chr5:13058564 1.99E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19256 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0891 K14803 - csv:101207477 584.719