Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0901 ATGGCGCCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGAATCCTGGTGGGGGTGTTTATTGTAGTAGTCCTTGTGGTGCTATCAATATGTGTTACTTCACGAAGAAAGTCTAGAAGGGTTAATGGCATGATTCCTCTCAGCCGTATTCCCACTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTTCAGCAATCCAGAACGGCCCCCACCCCCACCCCCACGATGGATTCGACACGGAGTCGGAAAAAGTTCTTCTATATTCAAACAAGGCATATAATTACAGCATATCAAGTTCAGTTGATCACACGGAGATCTATGCTATTGATACTGGAGAAGCAAGCAAGGAAGCAAGTGCTTTGCATAGACCCTCAGATTCAATACCACCAGACCCTTCGCCACTGGCTGGTCTGCCGGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTAATCAATGGGACACCTGTGGCTGTCAAAAAGCTTCTAAATCTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTGGAAGCCTTTGGGCATGTGCGGCATAAGAACTTAGTTCGGTTGCTGGGGTACTGCATTGAAGGAACGCACAGGATACTAGTATATGAATATGTGGACAATGGAAATCTAGAGCAGTGGCTTCATGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCACGAATCAAAATCCTCCTTGGTACTGCTAAGGCGCTGGCATATTTGCACGAGGCAATCGAACCAAAAATTGTGCATCGAGATATTAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTAGCCAAACTACTCGGTGCTGGGAAGAGTCATATAACCACCAGAGTTATGGGAACGTTTGGATATGTGGCGCCAGAATATGCCAAATCTGGACTTCTAAATGAAAAGAGCGACGTTTATAGCTTTGGAGTGGTCCTTTTGGAAGCAATTACTGGGAGAGACCCCGTTGATTATGGTCGTCCAACTCATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGAAGCAAACGGTCAGAAGAGGTGGTAGACCCAAATATAGAGAGAAAGCCATCAGTTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGATGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTGCCCGCATGCTCGAGTCCGAGGAATATCCAATTCCTCGACAGGATCGGAGACCCAGAAAGGGCCATGCTAATGCAGCCAAAATGGAGGCTGAGAAACAGGAGAGAGGAACCAGAAGACACAGATAA 1449 45.27 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVVVLVVLSICVTSRRKSRRVNGMIPLSRIPTASKEIKEIGVDHVSAIQNGPHPHPHDGFDTESEKVLLYSNKAYNYSISSSVDHTEIYAIDTGEASKEASALHRPSDSIPPDPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLNLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSVSELKRVLLTALRCVDPDADKRPKMSQVARMLESEEYPIPRQDRRPRKGHANAAKMEAEKQERGTRRHR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13013602 13017371 - Maker00025040 Lcy12g0901 648964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0901 482 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524(InterPro)
Lcy12g0901 482 FunFam Putative receptor-like serine/threonine-protein kinase 250 461 - -
Lcy12g0901 482 SUPERFAMILY Protein kinase-like (PK-like) 159 454 IPR011009 -
Lcy12g0901 482 MobiDBLite consensus disorder prediction 433 482 - -
Lcy12g0901 482 FunFam serine/threonine-protein kinase PBS1-like 152 249 - -
Lcy12g0901 482 SMART serkin_6 175 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0901 482 PANTHER OS01G0323000 PROTEIN 1 474 IPR052232 -
Lcy12g0901 482 CDD STKc_IRAK 181 446 - -
Lcy12g0901 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0901 482 Gene3D Phosphorylase Kinase; domain 1 156 249 - -
Lcy12g0901 482 Pfam Protein kinase domain 177 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0901 482 Gene3D Transferase(Phosphotransferase) domain 1 250 457 - -
Lcy12g0901 482 ProSiteProfiles Protein kinase domain profile. 175 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0901 482 MobiDBLite consensus disorder prediction 449 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0901 Lcy-Chr12:13013602 Lcy8g1625 Lcy-Chr8:42832368 3.46E-190 dispersed
Lcy12g0901 Lcy-Chr12:13013602 Lcy12g1064 Lcy-Chr12:18498706 2.20E-58 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy13g0904 Lcy-Chr13:16135842 1.01E-14 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy13g1261 Lcy-Chr13:29715591 3.39E-69 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy2g2014 Lcy-Chr2:38132784 1.39E-72 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy2g1462 Lcy-Chr2:18233563 2.38E-14 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy2g1571 Lcy-Chr2:21454477 1.73E-71 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy2g1541 Lcy-Chr2:20557177 4.83E-59 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy4g0776 Lcy-Chr4:9268109 7.38E-195 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy4g1564 Lcy-Chr4:39530662 3.55E-70 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy5g0631 Lcy-Chr5:7729724 1.65E-52 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy6g1411 Lcy-Chr6:20994050 9.64E-79 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy6g2022 Lcy-Chr6:43123297 8.39E-50 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy7g1441 Lcy-Chr7:24257963 1.26E-68 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy7g1187 Lcy-Chr7:13962237 7.35E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65517 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0901 - - - 0.0