Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0913 ATGGTGAAGGATATTGACGAGAAGATCAATCGAATGCGACTGGGAAAGTACGAGCTCGGAAAAACTCTCGGCCAAGGCAGTTTCGGAAAGGTCGTTTTCGCTAAAGACTCCCAAACCGATCAACCTTTTGCTCTCAAGGTCCTCGACAAGACCAGAATCATCCACCTCAACATCACCCATCAGATTAAAAGGGAAATCGGCACCCTCAAACTTCTCAACCATCCGAATATAGTCAGGCTACACGAGGTCTTGGCCAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTGAACGGCGGAGAATTGTTTGATAGAATCCTGGAAAACATACTTGTTGATGCCAAGGGAAATATTAAGATATCTGATTTCGGCTTAAGTGCGTTACCCGAACATTTTAGAAATGACGGTTTGCTTCACACCACGTGTGGAAGCCCGAACTACGTGGCACCTGAGATTCTCGCAAACAGAGGTTATGATGGTGCCGCGTCAGATATATGGTCCTGTGGAGTTATCTTGTACGTAATTCTTACGGGATCACTCCCTTTCGATGATAGAAATTTGTGTGTCCTTTATCATAAGATCTTTAAAGGAGAAACTCAGATACCCAACTGCCTGTCACAAGGGGCCCAAAATTTGCTCAGAAGGATTCTTGATCCCAACCCTGTTTCTCGGATAAACGTGGCAGGTATCAAAATGGACGAGTGGTTCAGACAGGACTACGATCCAGCCTACCTTGACGATGAAGAAGGTGTGCCCATCTCAATGCATCATCAAGTGCCATCTTATCTCGGAGAGAGCGAAAGGAGTTCAGAGTCTCCGACCACTATAAACGCTTTTCAACTCATTGGAATGTCCTCGTGCCTGGACCTTTCCGGTTTCTTTGAGAAAGAGGACGTTTCTGAGAGGAAGATCAGATTTACAACCAATCACTCCGCAAAACAAGACATCCTCAAGCGAATGGAGGATCTTGTCACAGAGATGGGGTGTCTTGTCCAGATGAAACAAGGAAGGTTGAAAGTAACGAAGGAGCACAAGGGTGAGAATGGTGTGGCCAGCATACTTTCGTTATCAGCAGAGGTTTTTGAGATAAGTCCATCGCTACATGTCGTAGAATTAAGAAAGTTGCAGGGAGAGTCATCTTCATATAGACAGTCGCACACTTCGGTCTGGACAGCGAGGCGAGGAGATCGATTGGCGGATGAGGTTTGCGCCGAGGGAGTGGAGGTGGACGGCGATGGCGCGACCGATCACTTAGGAGGCGCCGGTGACGATGGCGGTGCGGCCGGCGAGAGGCAGTGGGAGGGAGGAAGAACGCGTGGGTCTCCGCTGCTGCTAGCCCTCGATTCGCCGCGAGTTCCGACTGGAAGAGTAAGACGAAGCCTGTGCATCTCGTCGGAGGTTGGTTAA 1407 48.47 MVKDIDEKINRMRLGKYELGKTLGQGSFGKVVFAKDSQTDQPFALKVLDKTRIIHLNITHQIKREIGTLKLLNHPNIVRLHEVLASKSKIYMVLEYVNGGELFDRILENILVDAKGNIKISDFGLSALPEHFRNDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILYVILTGSLPFDDRNLCVLYHKIFKGETQIPNCLSQGAQNLLRRILDPNPVSRINVAGIKMDEWFRQDYDPAYLDDEEGVPISMHHQVPSYLGESERSSESPTTINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNHSAKQDILKRMEDLVTEMGCLVQMKQGRLKVTKEHKGENGVASILSLSAEVFEISPSLHVVELRKLQGESSSYRQSHTSVWTARRGDRLADEVCAEGVEVDGDGATDHLGGAGDDGGAAGERQWEGGRTRGSPLLLALDSPRVPTGRVRRSLCISSEVG 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13498007 13504639 - Maker00024998 Lcy12g0913 648976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0913 468 Gene3D Transferase(Phosphotransferase) domain 1 107 276 - -
Lcy12g0913 468 Pfam Protein kinase domain 17 106 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0913 468 Pfam Protein kinase domain 108 236 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0913 468 ProSiteProfiles NAF domain profile. 271 295 IPR018451 GO:0007165(InterPro)
Lcy12g0913 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 107 383 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy12g0913 468 SUPERFAMILY Protein kinase-like (PK-like) 14 281 IPR011009 -
Lcy12g0913 468 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524(InterPro)
Lcy12g0913 468 MobiDBLite consensus disorder prediction 410 447 - -
Lcy12g0913 468 ProSiteProfiles Protein kinase domain profile. 17 236 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0913 468 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Lcy12g0913 468 Pfam NAF domain 273 331 IPR004041 GO:0007165(InterPro)
Lcy12g0913 468 Gene3D Phosphorylase Kinase; domain 1 10 106 - -
Lcy12g0913 468 FunFam Non-specific serine/threonine protein kinase 271 394 - -
Lcy12g0913 468 Gene3D Kinase associated domain 1, KA1 277 393 - -
Lcy12g0913 468 CDD CIPK_C 277 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1297 Lcy-Chr11:36462403 Lcy12g0913 Lcy-Chr12:13498007 3.96E-145 dispersed
Lcy12g0913 Lcy-Chr12:13498007 Lcy5g1703 Lcy-Chr5:39519352 4.55E-115 dispersed
Lcy1g1974 Lcy-Chr1:24160406 Lcy12g0913 Lcy-Chr12:13498007 2.11E-21 wgd
Lcy10g0577 Lcy-Chr10:15544757 Lcy12g0913 Lcy-Chr12:13498007 1.21E-48 wgd
Lcy11g0780 Lcy-Chr11:23112884 Lcy12g0913 Lcy-Chr12:13498007 7.97E-22 wgd
Lcy12g0913 Lcy-Chr12:13498007 Lcy3g0050 Lcy-Chr3:1253858 3.21E-26 wgd
Lcy12g0913 Lcy-Chr12:13498007 Lcy5g0524 Lcy-Chr5:5764869 1.81E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65518 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0913 K07198 - csv:101206030 565.844