Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0913 | ATGGTGAAGGATATTGACGAGAAGATCAATCGAATGCGACTGGGAAAGTACGAGCTCGGAAAAACTCTCGGCCAAGGCAGTTTCGGAAAGGTCGTTTTCGCTAAAGACTCCCAAACCGATCAACCTTTTGCTCTCAAGGTCCTCGACAAGACCAGAATCATCCACCTCAACATCACCCATCAGATTAAAAGGGAAATCGGCACCCTCAAACTTCTCAACCATCCGAATATAGTCAGGCTACACGAGGTCTTGGCCAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTGAACGGCGGAGAATTGTTTGATAGAATCCTGGAAAACATACTTGTTGATGCCAAGGGAAATATTAAGATATCTGATTTCGGCTTAAGTGCGTTACCCGAACATTTTAGAAATGACGGTTTGCTTCACACCACGTGTGGAAGCCCGAACTACGTGGCACCTGAGATTCTCGCAAACAGAGGTTATGATGGTGCCGCGTCAGATATATGGTCCTGTGGAGTTATCTTGTACGTAATTCTTACGGGATCACTCCCTTTCGATGATAGAAATTTGTGTGTCCTTTATCATAAGATCTTTAAAGGAGAAACTCAGATACCCAACTGCCTGTCACAAGGGGCCCAAAATTTGCTCAGAAGGATTCTTGATCCCAACCCTGTTTCTCGGATAAACGTGGCAGGTATCAAAATGGACGAGTGGTTCAGACAGGACTACGATCCAGCCTACCTTGACGATGAAGAAGGTGTGCCCATCTCAATGCATCATCAAGTGCCATCTTATCTCGGAGAGAGCGAAAGGAGTTCAGAGTCTCCGACCACTATAAACGCTTTTCAACTCATTGGAATGTCCTCGTGCCTGGACCTTTCCGGTTTCTTTGAGAAAGAGGACGTTTCTGAGAGGAAGATCAGATTTACAACCAATCACTCCGCAAAACAAGACATCCTCAAGCGAATGGAGGATCTTGTCACAGAGATGGGGTGTCTTGTCCAGATGAAACAAGGAAGGTTGAAAGTAACGAAGGAGCACAAGGGTGAGAATGGTGTGGCCAGCATACTTTCGTTATCAGCAGAGGTTTTTGAGATAAGTCCATCGCTACATGTCGTAGAATTAAGAAAGTTGCAGGGAGAGTCATCTTCATATAGACAGTCGCACACTTCGGTCTGGACAGCGAGGCGAGGAGATCGATTGGCGGATGAGGTTTGCGCCGAGGGAGTGGAGGTGGACGGCGATGGCGCGACCGATCACTTAGGAGGCGCCGGTGACGATGGCGGTGCGGCCGGCGAGAGGCAGTGGGAGGGAGGAAGAACGCGTGGGTCTCCGCTGCTGCTAGCCCTCGATTCGCCGCGAGTTCCGACTGGAAGAGTAAGACGAAGCCTGTGCATCTCGTCGGAGGTTGGTTAA | 1407 | 48.47 | MVKDIDEKINRMRLGKYELGKTLGQGSFGKVVFAKDSQTDQPFALKVLDKTRIIHLNITHQIKREIGTLKLLNHPNIVRLHEVLASKSKIYMVLEYVNGGELFDRILENILVDAKGNIKISDFGLSALPEHFRNDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILYVILTGSLPFDDRNLCVLYHKIFKGETQIPNCLSQGAQNLLRRILDPNPVSRINVAGIKMDEWFRQDYDPAYLDDEEGVPISMHHQVPSYLGESERSSESPTTINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNHSAKQDILKRMEDLVTEMGCLVQMKQGRLKVTKEHKGENGVASILSLSAEVFEISPSLHVVELRKLQGESSSYRQSHTSVWTARRGDRLADEVCAEGVEVDGDGATDHLGGAGDDGGAAGERQWEGGRTRGSPLLLALDSPRVPTGRVRRSLCISSEVG | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 13498007 | 13504639 | - | Maker00024998 | Lcy12g0913 | 648976 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0913 | 468 | Gene3D | Transferase(Phosphotransferase) domain 1 | 107 | 276 | - | - | |
Lcy12g0913 | 468 | Pfam | Protein kinase domain | 17 | 106 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy12g0913 | 468 | Pfam | Protein kinase domain | 108 | 236 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy12g0913 | 468 | ProSiteProfiles | NAF domain profile. | 271 | 295 | IPR018451 | GO:0007165(InterPro) | |
Lcy12g0913 | 468 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 107 | 383 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lcy12g0913 | 468 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 281 | IPR011009 | - | |
Lcy12g0913 | 468 | ProSitePatterns | Protein kinases ATP-binding region signature. | 23 | 46 | IPR017441 | GO:0005524(InterPro) | |
Lcy12g0913 | 468 | MobiDBLite | consensus disorder prediction | 410 | 447 | - | - | |
Lcy12g0913 | 468 | ProSiteProfiles | Protein kinase domain profile. | 17 | 236 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy12g0913 | 468 | FunFam | Non-specific serine/threonine protein kinase | 8 | 96 | - | - | |
Lcy12g0913 | 468 | Pfam | NAF domain | 273 | 331 | IPR004041 | GO:0007165(InterPro) | |
Lcy12g0913 | 468 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 106 | - | - | |
Lcy12g0913 | 468 | FunFam | Non-specific serine/threonine protein kinase | 271 | 394 | - | - | |
Lcy12g0913 | 468 | Gene3D | Kinase associated domain 1, KA1 | 277 | 393 | - | - | |
Lcy12g0913 | 468 | CDD | CIPK_C | 277 | 384 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1297 | Lcy-Chr11:36462403 | Lcy12g0913 | Lcy-Chr12:13498007 | 3.96E-145 | dispersed | |
Lcy12g0913 | Lcy-Chr12:13498007 | Lcy5g1703 | Lcy-Chr5:39519352 | 4.55E-115 | dispersed | |
Lcy1g1974 | Lcy-Chr1:24160406 | Lcy12g0913 | Lcy-Chr12:13498007 | 2.11E-21 | wgd | |
Lcy10g0577 | Lcy-Chr10:15544757 | Lcy12g0913 | Lcy-Chr12:13498007 | 1.21E-48 | wgd | |
Lcy11g0780 | Lcy-Chr11:23112884 | Lcy12g0913 | Lcy-Chr12:13498007 | 7.97E-22 | wgd | |
Lcy12g0913 | Lcy-Chr12:13498007 | Lcy3g0050 | Lcy-Chr3:1253858 | 3.21E-26 | wgd | |
Lcy12g0913 | Lcy-Chr12:13498007 | Lcy5g0524 | Lcy-Chr5:5764869 | 1.81E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65518 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0913 | K07198 | - | csv:101206030 | 565.844 |