Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0924 ATGGCGACGGCCGCTTCTCTGGGGAACCCTGTTCTGACGAGAGGCACGTTACTTGGTTGTATAAGCAAAGAGCAATTGACTTCCCGCAGAGCTCAGAAGATGACGCTGTGTCTCTGCGCCATGGACTCCAAATCAGTGGGTGTTGGAGGTGATGTCTTCTCTGTGACGTCGTCTGCTAAGTCCGGAGTTGATTATCTTGGACAGAGCACTAAAGGAGATATGAATCTCAAACTCGAGCGTCTGGAAGCTTTTGGCGTAGATGGTGAAGAAACCTTAGAAGGTCCTATCGAGGAAGTAGCGAGGTTGGAGGCACAGGAAGCCGAGGATCTCCTTACAGATTTGGGAATCCCGTGTGGATCATTCATTCAGCCTGTGGATTTTAGCAAGGAGGATGATGCTCTTGAAGATTCTTATTCTGAAGCTTTTGACTTATTATTTCGGGATTGTGACAAGAAGACTCCTCATCTGTTTGGTTGTCTGTTTGGTGTTTTCAGCTGTCATTTTGGTTCTCGGTTGATTGGGTTCTGCAAAGATTTTCTGGAACCCACATTTCAGAGTTTGATATTCATTACAATGCTTGCTTTGGAAAATCCATTTCACGAGCATTTTATTGCTTCAGAGAAATTTCTTTCAGTGAGATCCTCTTGGCTTTTGACAGTCTTAGATTGTTTATTTCCTCCACTCACAAATGTTAATTTGCAGAGTCCTTCATCCAGAAATTCACCACAAGGTATATTTTGTAGCCGAACATTGAATCTTCGATCGATCAGTGCCATTGGATATGACATGGACTACACATTGATGCATTATAATGTCATGGCTTGGGAGGGAAGAGCGTACGACTACTGTATGGAAAATTTAAGGAACATGGGTTTCCCTGTTGATGGACTCGCTTTTGACCCAGACTTGGTTATAAGAGGCCTTGTCATAGACAAAGAGAGAGGTAATTTAGTAAAGGCCGATCGTTTTGGTTATATAAAAAGAGCAATGCATGGAACAAACATGCTTTCTACTCGAGATGTAAGTGAGATTTATGGGAGAGAATTGGTGGATCTACGAAAGGAGAATCGATGGGAGTTCCTCAATACACTCTTTTCTGTATCAGAAGCTGTTGCGTATATGCAGATGGTAGACAGATTGGATGATGGAGCCATAGGAGCCGCACTTGGTCCACTTGATTATAAAGGACTTTACAAGGCTGTTGGTAAAGCACTATTCAGGGCACATGTCGAGGGTCAGCTTAAGAGTGAGATAATGTCTAATCCTGAATTATTTGTTGAGCCTGACCCTGTACTACCATTAGCCCTATTGGATCAAAAAGAGGCAGGAAAAAAGCTTTTGCTTATCACCAACTCAGATTATCATTACACGGATAAAATGATGCAGCATTCTTTTAATAGATTTCTTCCAAATGATATGGGATGGCGAGACCTATTTGATATCGTAATAGTCTCAGCAAGAAAGCCAGAATTTTTCCAAATGTCTCATCCATTGTACGAGGTGGTGACTGGTGAGGGTCTCATGCGCCCATGCTTCAAGGCTGTTGCAGGTAATTGA 1557 42.71 MATAASLGNPVLTRGTLLGCISKEQLTSRRAQKMTLCLCAMDSKSVGVGGDVFSVTSSAKSGVDYLGQSTKGDMNLKLERLEAFGVDGEETLEGPIEEVARLEAQEAEDLLTDLGIPCGSFIQPVDFSKEDDALEDSYSEAFDLLFRDCDKKTPHLFGCLFGVFSCHFGSRLIGFCKDFLEPTFQSLIFITMLALENPFHEHFIASEKFLSVRSSWLLTVLDCLFPPLTNVNLQSPSSRNSPQGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMENLRNMGFPVDGLAFDPDLVIRGLVIDKERGNLVKADRFGYIKRAMHGTNMLSTRDVSEIYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVDRLDDGAIGAALGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSNPELFVEPDPVLPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKAVAGN 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13806621 13813031 - Maker00024809 Lcy12g0924 648987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0924 518 Gene3D - 406 517 IPR023214 -
Lcy12g0924 518 Pfam 5' nucleotidase family 245 508 IPR008380 -
Lcy12g0924 518 SUPERFAMILY HAD-like 242 514 IPR036412 -
Lcy12g0924 518 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 236 512 IPR008380 GO:0008253(PANTHER)
Lcy12g0924 518 NCBIfam HAD-IG family 5'-nucleotidase 245 511 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0924 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0924 Lcy-Chr12:13806621 Lcy13g1984 Lcy-Chr13:38861018 4.01E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28