Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g0941 | ATGTGGGAACCCTTCTCCTCCGTGTTGTGGTCGTTTTTCATTCCTACACTGTTTTTGTCCATTGCTTTCCTTGCAAAGAAACTAAAATATCAGAGGCCATACAGATTTCCTCCAGGGAGAAGAAGCTGGCCTGTAATAGGTGACAGCTTCAACTGGTACAGTGCTGTTGCAAGTTCTCATCCCCCCAAGTATGTGGAAGAACAGGCCAAAAGGTATGGGAAGATCTTCTCGTGCCGTGTGTTTGGAAAATGGGCAGTGGTATCGGCAGATCCAGCGTTTAATCGATACGTGATGCAAAACGAAGGGAAATTGTTCCAATCGAGCTATCCAAAATCTTTCAGAGATTTGGTAGGGACGAACGGTGTCATCACAGTTCAAGGGGAACAACAAAGAAAACTGCATGCAATTGCCACCAATATGATGCGTCTAGACAAACTCAAGTTCCGCTTCCTACATGATATCCAAACCATAATGATCCATACCTTGTGCAGTTTCCATAACGATCAAATAGCCATTAATGTTATGGTAAGTCAGCTGTTGGGTGTGTCCAGTGAATCGGAAGTGAATGAGATTAGTCGGTTATTTTACGACTTCGTTGATGGCTGTCTATCTATTCCTATCAACTTGCCTGGCTTTGCTTATTACACGGCCATGAAGGCAAGGGAGAAAATCATAAGAAAAATTAAGAAGAAAATAGAGATGCACAAGTCCAGCGTAGCACTGGGAAGGAGCGGAGAGGGAGTGCTGGCAGGACTATTAGAGGAGCAAAACTTATCTGATGAGGCAGTTGTAGATTTCATTATCAATCTTCTTTTTGCTGGAAACGAAACTACTTCTAAAACAATGCTTTTCGCTGTCTATTTCCTAACCCACTCACCTAAAGCAATGAAGCAACTTGTGGATGAACAAGATGCTTTAAGAAACGAGCATGGAGATAATACGATCACATGGCAGGATTACAAATCAATGTCCTTTACCCAGTGTGGATCTTTTGTTGTTCCATTTCTTTCTGCTGTACATTTGGACGAGAATATATACGAAGAAGCTTTAACTTTCAACCCTTGGAGATGGATGGAGCTTAAAAATCAGGACATGAGAAATTGGAGGAGTAGCCCATTCTTTGCTCCATTCGGAGGAGGTGCTAGATTGTGTCCTGGAGCAGAATTGGCGCGTCTCCAAATTGCTTTATTTCTCCACCACTTTGTTACCAAGTATCGGTCAGTGGGTAGTGACGTGCGTCGTGCTACTAATGCGCAGCAGCTTGCTCAAGTGCAAACCTTGGAAGGTAAGGTTGGCTGTCGAGATCAGTGTGAAAAGGCCTTGGAAGAAAGCCCAGTTGCGGCTGCATATCGAGCGCATTTTCCTCCGTGTTCTGCTTCGACAATTTTGTCCTCAACATGGGGCTACTTTTCTTATATGGCTTGTGAGCGCATTTTGATCGCATTCCTCACATCCTTAGGTCTAGATGCAAGCGCAATTCTTTAG | 1485 | 43.77 | MWEPFSSVLWSFFIPTLFLSIAFLAKKLKYQRPYRFPPGRRSWPVIGDSFNWYSAVASSHPPKYVEEQAKRYGKIFSCRVFGKWAVVSADPAFNRYVMQNEGKLFQSSYPKSFRDLVGTNGVITVQGEQQRKLHAIATNMMRLDKLKFRFLHDIQTIMIHTLCSFHNDQIAINVMVSQLLGVSSESEVNEISRLFYDFVDGCLSIPINLPGFAYYTAMKAREKIIRKIKKKIEMHKSSVALGRSGEGVLAGLLEEQNLSDEAVVDFIINLLFAGNETTSKTMLFAVYFLTHSPKAMKQLVDEQDALRNEHGDNTITWQDYKSMSFTQCGSFVVPFLSAVHLDENIYEEALTFNPWRWMELKNQDMRNWRSSPFFAPFGGGARLCPGAELARLQIALFLHHFVTKYRSVGSDVRRATNAQQLAQVQTLEGKVGCRDQCEKALEESPVAAAYRAHFPPCSASTILSSTWGYFSYMACERILIAFLTSLGLDASAIL | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 14415155 | 14423653 | - | Maker00024876 | Lcy12g0941 | 649004 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g0941 | 494 | SUPERFAMILY | Cytochrome P450 | 30 | 406 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 377 | 386 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | P450 superfamily signature | 384 | 395 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | P450 superfamily signature | 375 | 384 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | P450 superfamily signature | 273 | 290 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | Pfam | Cytochrome P450 | 37 | 327 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | Pfam | Cytochrome P450 | 328 | 407 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | Gene3D | Cytochrome P450 | 26 | 328 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PANTHER | CYTOCHROME P450 26 | 332 | 405 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Lcy12g0941 | 494 | PRINTS | E-class P450 group I signature | 262 | 279 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | E-class P450 group I signature | 282 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | E-class P450 group I signature | 335 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | E-class P450 group I signature | 384 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | E-class P450 group I signature | 69 | 88 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | PRINTS | E-class P450 group I signature | 374 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0941 | 494 | Gene3D | Cytochrome P450 | 329 | 424 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0941 | Lcy-Chr12:14415155 | Lcy6g0960 | Lcy-Chr6:9974545 | 4.57E-77 | dispersed | |
| Lcy1g0187 | Lcy-Chr1:1755995 | Lcy12g0941 | Lcy-Chr12:14415155 | 2.89E-06 | transposed | |
| Lcy11g0893 | Lcy-Chr11:26613718 | Lcy12g0941 | Lcy-Chr12:14415155 | 5.69E-13 | wgd | |
| Lcy12g0941 | Lcy-Chr12:14415155 | Lcy2g1368 | Lcy-Chr2:15669979 | 1.32E-29 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g0941 | - | - | - | 0.0 |