Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1064 ATGAAGCTCGCCCCCTTCCTTCCATGGCCCGAACTCCTCCTCTTCTTCCTCTTCTCTGCTTCTTCATTCCTTCACTCTTCCCCTCTTTCACTTCCCCACGACGAAGCACGAGCGCTTATGTCAATCAAGGCCTCCTTTAGCAATGTAGCTAATGTGCTGCTCGACTGGGATGATCATCATAACAATGATTTCTGTTCATGGCGCGGGGTTTTCTGCGATAATGTTACCCTTTCTGTTGCTGCTCTGAACTTGTCCAGCTTGAATCTGGGTGGGGAGATTTCACCGGCCATTGGAGATTTGAGGAATTTACAATCAATGTACGGTACTATCAGGAATAAACTGACTGGCCAAATCCCTGATGAGATTGGTAATTGTGGTCTTCTTGTCCATTTGGACTTGTCCGATAATCTGCTTTATGGAGACATCCCCTTCACGGTATCGAAGCTAAAGCAGCTTGAGTTCTTAAATCTGAAGAACAATCAGTTGACTGGTCCAATCCCTTCGACACTAACCCAGATTCCTAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAATGGATTGCGAGGGAACTTTTTGACAGGGTCGTTGTCCTCGGATATGTGTCAGTTGACTGGCTTGTGGTACTTGTAAGTGTGGATTATAATCATTCTCTTTATTCTAGGGCTTATTGCTTCGTAGTTATTGAACTGTTGTGCTCCGGTTTTGCTCATCTTATCTTTAGCGATGTAAGGGGCAACAATCTGACGGGCACGATACCAGATAGCATAGGGAACTGTACAAGTTTTGAAATTCTGGATATATCCTACAACCAGATCTCAGGGGAGATTCCATACAACATTGGATTTCTTCAAGTGGCCACATTATCATTACAGGGTAATAGGCTGACTGGTAAGATTCCCGATGTCATTGGATTGATGCAGGCCCTTGCCGTCTTGGATTTGAGTGAGAATGAGCTTGAAGGGCCAATACCGCCAATACTCGGCAACCTGTCCTACACAGGAAAATTGTACCTGCATGGAAACAAGTTGACTGGGCCAATTCCTCCTGAGCTGGGCAATATGTCAAAGCTTAGCTACTTACAACTTAATGATAACCAGCTGGTTGGCACAATTCCTTCTGAACTTGGAAAATTGGATCAGTTGTTCGAATTGAATCTTGCTAATAATTACCTGGAAGGACCCATCCCTCACAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACCGTCTTAACGGATCGATCCCTTTGGGTTTCCAAGATCTTGAGAGCTTGACATATTTGAATCTTTCAGCAAACAACTTCAAAGGCAGGATTCCTGTTGAGCTGGGACGCATAGTTAACCTCGATACCTTGGATCTATCTCGCAATTACTTCTCGGGTCTTGTTCCTGCTTCTATTGGCGATTTGGAGCACCTTCTTAGCCTCAATTTGAGCGATAATCGACTTGTTGGGCCATTGCCAGCAGAATTTGGAAATCTCCGAAGCATCCAGACTATTGATATGTCATTCAACAACTTCTCTGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTAATTTTGAACAACAACCATTTGCAAGGGAAGATACCCGATCAGCTGACAAATTGTTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCTATGAAAAATTTTTCTCGATTCGAACCTGATAGCTTTATTGGGAATCCGCTGCTGTGTGGAAACTGGCTAGGATCAATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGCGGTTGTTTGTATGACATTTGGGTTCATTATATTGTTGTCAATGGTTATAATTGCCGTGTCCAAGTCGAATCCATCGAAGCAATTGATGAAAGGTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGATGACATTATGAGAATGACCGAGAATCTAAGTGAGAAGTACATTATTGGTTACGGAGCTTCGAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTACGCACACAATTTACGGGAGTTTGAGACTGAACTTGAAACTGTTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCTCTCTGGGATCTGCTTCATGGACCAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAGATCGCGGTTGGAGCTGCACAAGGGCTTGCTTATCTTCACCATGATTGCAACCCGCGAATCATTCATCGTGATGTGAAGTCTTCAAATATTCTACTGGATGAAAACTTTGAGGCCCATCTTTCTGATTTTGGGATCGCCAAATGCATCCCAACTGCCAAGACACATGCATCGACTTATGTGCTGGGAACAATTGGCTACATCGATCCAGAGTACGCTCGAACCTCCCGGCTAAACGAGAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTGGAACTACTAACTGGAAAGAAAGCTGTGGATAATGACGCCAATTTGCATCAACTGATATTGTCGAAGACTGACAACAACACTGTGATGGAAGCTGTTGATCCTGAGGTTTCGGTCACCTGCATGGATTTAGGCCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAGAGGCCAACCATGCACGAAGTTGCTCGAGTGTTGGTCTCCCTCCAGCCACCACCACCTACTGTGAAACAAACTTCATTCCCCATGAAAAAGTTGGATTATGCACAGTTTGTAATTGATAAGGGTCAGAATCAAAACGTGAAAGGGCAGGAGCAGCAGAAATCAGATGTGAATTCTTCGGATGCTCGGTGGTTTGTGCGGTTCGGGGAAGTTATATCTGAACAATAA 3021 43.53 MKLAPFLPWPELLLFFLFSASSFLHSSPLSLPHDEARALMSIKASFSNVANVLLDWDDHHNNDFCSWRGVFCDNVTLSVAALNLSSLNLGGEISPAIGDLRNLQSMYGTIRNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEWIARELFDRVVVLGYVSVDWLVVLVSVDYNHSLYSRAYCFVVIELLCSGFAHLIFSDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQDLESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSRNYFSGLVPASIGDLEHLLSLNLSDNRLVGPLPAEFGNLRSIQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHLQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPDSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTAVVCMTFGFIILLSMVIIAVSKSNPSKQLMKGPPNLVVLHMDMAIHTFDDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETVGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDANLHQLILSKTDNNTVMEAVDPEVSVTCMDLGHVRKTFQLALLCTKHNPSERPTMHEVARVLVSLQPPPPTVKQTSFPMKKLDYAQFVIDKGQNQNVKGQEQQKSDVNSSDARWFVRFGEVISEQ 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18498706 18505077 + Maker00024453 Lcy12g1064 649127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1064 1006 Pfam Leucine rich repeat 128 186 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Gene3D Ribonuclease Inhibitor 248 607 IPR032675 -
Lcy12g1064 1006 SUPERFAMILY L domain-like 61 290 - -
Lcy12g1064 1006 ProSiteProfiles Protein kinase domain profile. 677 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1064 1006 SUPERFAMILY Protein kinase-like (PK-like) 656 944 IPR011009 -
Lcy12g1064 1006 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 349 943 IPR051716 -
Lcy12g1064 1006 ProSiteProfiles Leucine-rich repeat profile. 175 197 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Gene3D Phosphorylase Kinase; domain 1 641 752 - -
Lcy12g1064 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 336 608 - -
Lcy12g1064 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 32 197 - -
Lcy12g1064 1006 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Lcy12g1064 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1064 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 246 335 - -
Lcy12g1064 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 648 752 - -
Lcy12g1064 1006 SMART serkin_6 677 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1064 1006 Gene3D Ribonuclease Inhibitor 32 201 IPR032675 -
Lcy12g1064 1006 Pfam Protein kinase domain 680 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1064 1006 Gene3D Transferase(Phosphotransferase) domain 1 753 955 - -
Lcy12g1064 1006 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524(InterPro)
Lcy12g1064 1006 SMART LRR_typ_2 535 559 IPR003591 -
Lcy12g1064 1006 SMART LRR_typ_2 319 343 IPR003591 -
Lcy12g1064 1006 SMART LRR_typ_2 367 391 IPR003591 -
Lcy12g1064 1006 SMART LRR_typ_2 149 172 IPR003591 -
Lcy12g1064 1006 SMART LRR_typ_2 439 463 IPR003591 -
Lcy12g1064 1006 SMART LRR_typ_2 173 197 IPR003591 -
Lcy12g1064 1006 SMART LRR_typ_2 487 510 IPR003591 -
Lcy12g1064 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 753 954 - -
Lcy12g1064 1006 Pfam Leucine Rich Repeat 369 391 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine Rich Repeat 394 415 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine Rich Repeat 441 461 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine Rich Repeat 276 296 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine Rich Repeat 348 367 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine Rich Repeat 322 343 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 Pfam Leucine Rich Repeat 561 578 IPR001611 GO:0005515(InterPro)
Lcy12g1064 1006 SUPERFAMILY L domain-like 244 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1064 Lcy-Chr12:18498706 Lcy9g1415 Lcy-Chr9:39135363 7.10E-77 dispersed
Lcy6g2022 Lcy-Chr6:43123297 Lcy12g1064 Lcy-Chr12:18498706 2.81E-56 dispersed
Lcy9g1937 Lcy-Chr9:44371168 Lcy12g1064 Lcy-Chr12:18498706 3.83E-161 transposed
Lcy1g2011 Lcy-Chr1:25540046 Lcy12g1064 Lcy-Chr12:18498706 2.09E-32 wgd
Lcy12g1064 Lcy-Chr12:18498706 Lcy12g1334 Lcy-Chr12:29426918 2.67E-50 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy12g1064 Lcy-Chr12:18498706 2.20E-58 wgd
Lcy12g1064 Lcy-Chr12:18498706 Lcy9g0626 Lcy-Chr9:20737737 3.88E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65519 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1064 K20718 - csv:101213139 1657.11