Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1080 ATGGATGTTTCTGATTCTTCTTCCTCCTCCCACTCAAAACTCTTTGCCTGCCGCTCCGACGACGACATTCTCTTGGCCTCCCGATACCCCAAGAAGAGGGCCGGCAGAAAGAAGTTCAAGGAGACTCGCCACCCCGTCTACCGTGGTGTCCGCCGCCGCAACTCCGGCAAGTGGGTCTGCGAGGTCAGGGAGCCCAATAAGAAGACTAGGATTTGGCTCGGCACTTTCCCCACCGCCGAGATGGCCGCCAGGGCCCACGACGTCGCTGCCATTGCCCTCCGCGGCCGCTCCGCCTGCCTCAATTTCGCCGACTCCGCCTCCACGCTTCCCCTGCCGCCCACCGTCGACGCCAAGGATATTCAGAAGGCCGCCGCCGAGGCTGCCGAGGCCTTTCGCCCGCCGGAGCCTGCGCCTTCCGCGGCGGCCGAGGCGGCGACGGCGGCGGAGGAGGTGTTTTACTTGGATGAGGAGGCGGTGTTTGGGATGCCCGGGTTGCTGGCGGACATGGCGGAGGCAATGCTGTTGCCGCCGCCGAATTGCGACTATGGGGCTAATTCCATGGATCTCGATGCCGACATGTCGTTATGGAGTTACTCAATTTGA 603 63.02 MDVSDSSSSSHSKLFACRSDDDILLASRYPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPLPPTVDAKDIQKAAAEAAEAFRPPEPAPSAAAEAATAAEEVFYLDEEAVFGMPGLLADMAEAMLLPPPNCDYGANSMDLDADMSLWSYSI 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19290110 19290712 - Maker00024539 Lcy12g1080 649143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1080 200 CDD AP2 47 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1080 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 198 IPR045277 GO:0003700(InterPro)
Lcy12g1080 200 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1080 200 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Lcy12g1080 200 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1080 200 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1080 200 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1080 200 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Lcy12g1080 200 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1080 200 Pfam AP2 domain 45 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1080 Lcy-Chr12:19290110 Lcy6g0195 Lcy-Chr6:1783972 3.80E-84 dispersed
Lcy12g1080 Lcy-Chr12:19290110 Lcy4g0942 Lcy-Chr4:15461480 2.04E-31 wgd
Lcy12g1080 Lcy-Chr12:19290110 Lcy6g1927 Lcy-Chr6:40315238 1.04E-38 wgd
Lcy12g1080 Lcy-Chr12:19290110 Lcy9g0379 Lcy-Chr9:10585394 2.58E-22 wgd
Lcy12g1080 Lcy-Chr12:19290110 Lcy9g0587 Lcy-Chr9:19221192 9.43E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19260 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1080 - - - 0.0