Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1111 ATGTCGCCATCCTCCGCATTCAATCCCCTCGCACACACACGCTCTTGGGAAACCCTAACACACGCCACTTCTTCTTCTTCTTCACGTTGTTTCCTCCTCTGTTTCAGCAAGCTCAGTTTCAAACAGTCCCCCACTGCCCACTTGATCTGCAAATGGTCCTCCAAGTTGCGGTCGAGGCTCATCGGGGACTACCCTTTCAGCCATAGGGTTCTCTTAACTTTAGAGGAGAAGAAAGTTGCTTACAAAAGGTTCTTGGAAGGGAGCCCTGAAGGGAAGGTGCCGGTTGTGAAATTTGATGATAAATGGGTTCTTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTATCCAGTCGAGCCTTCGCTTGTTACTCCTCCTGAAGTTTCTTCTATGGGATCAAAGATATTTGGTGCTTTTGTAACATTTTTGAAGTGCAAGGACCCGATTGATGTTTCAGAGAAGGATTTTCTTGAAGAGTTGAAGACACTCAATGAGCATCTTAAGGCTCATGTATTCACTGGACAGAAGGTAACTGCTGTTAATTTAAGTCCAGCACCAAAGTTGTACCATGTTGACGTTGTTCTCTGCCATCTTAAGAAGTGGGCTATCCCTAAAGACTTAGCCAGTTTAATCACCTACAAAGAGATCACTGATGCTAGTCATGATTTGTGCTATGTCTATGGACTTTATTTATGGGAAATAAACTTCCCAAGTGACTGTAGAACAATCAATTCTTGCATATATGAAGTGGAGCTTATTCATACACAGATGGGCAGAGGCCTTGCAAATCTCTTGTGA 801 43.7 MSPSSAFNPLAHTRSWETLTHATSSSSSRCFLLCFSKLSFKQSPTAHLICKWSSKLRSRLIGDYPFSHRVLLTLEEKKVAYKRFLEGSPEGKVPVVKFDDKWVLDSDVIVGILEEKYPVEPSLVTPPEVSSMGSKIFGAFVTFLKCKDPIDVSEKDFLEELKTLNEHLKAHVFTGQKVTAVNLSPAPKLYHVDVVLCHLKKWAIPKDLASLITYKEITDASHDLCYVYGLYLWEINFPSDCRTINSCIYEVELIHTQMGRGLANLL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21109465 21112238 - Maker00034334 Lcy12g1111 649174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1111 266 CDD GST_N_family 65 110 - -
Lcy12g1111 266 SUPERFAMILY Thioredoxin-like 65 121 IPR036249 -
Lcy12g1111 266 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 58 217 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro)
Lcy12g1111 266 Gene3D - 124 223 - -
Lcy12g1111 266 Gene3D Glutaredoxin 47 121 - -
Lcy12g1111 266 SUPERFAMILY GST C-terminal domain-like 135 216 IPR036282 -
Lcy12g1111 266 Pfam Glutathione S-transferase, N-terminal domain 65 115 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0225 Lcy-Chr10:3573627 Lcy12g1111 Lcy-Chr12:21109465 1.55E-55 dispersed
Lcy12g1111 Lcy-Chr12:21109465 Lcy5g1378 Lcy-Chr5:32972912 2.21E-85 dispersed
Lcy12g0185 Lcy-Chr12:2281418 Lcy12g1111 Lcy-Chr12:21109465 3.86E-46 transposed
Lcy12g1111 Lcy-Chr12:21109465 Lcy3g0612 Lcy-Chr3:23078808 1.64E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1111 K21888 - csv:101203666 214.927