Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1309 GATCACTCTCCCGATGCCCCCATTCCCTCAATCTTCAATAAACCGTCACCGGAAAAATCCCTTCTCTCCGGCTACCTCTCCTCCATGTCCGAACGACCACCATCCCCCGATCATGATTCCTCCCTCTCCCCGTCCCCCGCCAAGCTCCGCAAGATCCCCCCTATCCCCATTCGCCGCGATTCCAAACCCAACGCCGGAGACTCCGATTCCGATCAGGAGCATGACCCCGCTGAGGATCACCCTCATCAATCTGGCGACTCCTCCATCATCATGGCCTCGTCCCTCGGGTTGAACCACATTCGGACGCGCTCTGCTCCTTTGCCGCTGCGGACCTCTGCCGTTGGCACGCCTTCGAATTTGGGCGACAATTCCAGGAATAATGTCACCGAAGGAGCCGAGTCCGAGCCGAAAATTTCATCCCCAGAACTGGGGAAAAAAGTTATGTGGAGTCAATCGAAATCGATGAGATATCCGTCGGCTCTGAATCATGATTTTGAGGTTAATCATGCAGCATTTGCTAAGGAAATTCAGTCTCCACGATTTCGGGCAATACTGCGTGTTACTAGTGGAAGAAAGAAGAGAACCCCTGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAAGGTGTTCGGCCTTTTCCAGTTTGGAAGCCTAGGGCATTTGGACATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAACTGGGCATTTTTGCTGGAGATCTTGTAGATATACTTGAAAAGACAGACCGGTCTCAGCCTGAACTTAAAGAGGGTTTGGAGGATTTATTGGTGATTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGGCGAAAGGTGAAGGTATGGTCCAAAATCTAGATGACCGGCGCCAGGAGCTGTCATTAGGGGTTCTTAAGCAAGCCCACACCCGTCTTCTTTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGCGGTTATGAAGATGAGCACATTTTGGGTCTTCACCAACTTAGTGATCTGGGAATTTATCCAGAGAAAATTAGGCAGCTCGAACATCTTGACTTTGGTGATCCATTAACTGGGAAAGAAGATGTTGAGAAACAGCTGAAGTTAGTTGGGAAAGATCAAGCCGGTCGCATTGTGAAGCAAGATTTAGATCAAAGTTTTAGTAAAAATGCTGGAAATGTTGATCTGGACTCTGCCATAAGTATTGATTCATCGTCAAGCATATATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACACTGACTCTATTGATACAACACCTTCCAAGGATAAACTTGGACTGTTGCATGTACATGAAGCTAAACCTGGTAGTAACAACCAATTAGATACCCCATCTAGTCATATTGAGCATTTAGAAGCACCACCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGCATTTGTGAGGTTGAAATTCCTACTATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCAAAAAGTACACCAAGAAGTAGCGATACTTCCTGTGGAAATTTTGATACTGTTAAAGTTACGACATCAAGTATGCAAGAAGAGATTTTTGAGTTGTCATCTAAAGGAATTAGTTTGTCATGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCTTCCTTCATGGAAAGTCAGGATATTTTTCCTGATCCATCATACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAATGTCAGGTGGAACTCTAACACCAAGATCACCTCTTTTAACACCAAGATCCAGCCAGATTGAATTGTTGTTGCATGGGCGAAGAGCAATATCCGAACTTGAAAATTATCAGCAGATATACAAATTATTGGAAATTGTTCGTTCCATTGCAAATGTTAACAACTCTGACTATGGTGCATTGGAGTGTATGCTTGATCGATTAGAAGACCTTAAATATGCAATCCAGGATAGGAAAGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTACAGGAAAAATATGTACATCTTTGTGGGCAAATAGAAGATGATAAAGTAGACTCTTCAAATGGCTTGGTTGATGAAGAGAGTTCAGTGGAGGATGATACTGTTCGTAGTTTGCGCGCAAGTCCTGTTAACCCATGTTCAAAAGATCGAACATCCATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTCCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTGCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGATATTTACTCCTTACTGAGGAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATTGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATCAAGGGTCTTGTGCATGGGGATAGCAAGATCCGCTTGGACGGCCATGGTGATTCATTAACGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCTATCAGTGGAACTGCTTCACTTGGAGACAATGTACCAACATCTCAATCTTTGTCAAAAAGAGAACAGAGACAAAAGCATTCAGTTGTTGGTACTCCGGATTATTTGGCCCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTTGGAGTACCCCCGTTCAATGCAGAAAGTCCACAGGTTGAATATGCTATTGTGGGACGTGTTCTGGTTGTTGTATGGGTTGTTGGGAGTGTGAGGGGTATAGTAGGGGTTTTGGGGCTCTCTTGGGAGGCAAGAGTTATTATTCCACTGCAGCAAATTTTTGATAATATCATTAATAGAGACATACCATGGCCCAAGGTACCTGAGGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGCTGGCTGAAAATTCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCAACATCCTTTTTTCAAGGATATTAATTGGGAAACACTTGCAAGGCAAAAGGCAATGTTTATACCATCAGCAGAGCCGCATGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGGCGAGGACTTTAATGGTGGAAGTGACTTTGATGATCATGAGTTGACTGATACTTGCAGCAGTAGTTCATTTAGCAACCTACAAGATGAAGATGACTTTGAGATTGTTATATCCTCCGTTTTGATTGCTGGGATGACATTGAAACAGGGAGACGAATGTGGTAGTTTGGCTGATTTCTGTACATCAGCCCTTACCGTGAAGTACTCGTTCAGCAATTTCTCGTTCAAGAACTTATCACAGCTGGCCTCCATCAATTATGATTTTGTTGTGAAGAGCAATCAAAACTCACCAGATGTATCCAAGCCATCCATTCCTTGA 3846 42.93 DHSPDAPIPSIFNKPSPEKSLLSGYLSSMSERPPSPDHDSSLSPSPAKLRKIPPIPIRRDSKPNAGDSDSDQEHDPAEDHPHQSGDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVTEGAESEPKISSPELGKKVMWSQSKSMRYPSALNHDFEVNHAAFAKEIQSPRFRAILRVTSGRKKRTPDIKSFSHELNSKGVRPFPVWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKTDRSQPELKEGLEDLLVIARKCATMSPTEFWAKGEGMVQNLDDRRQELSLGVLKQAHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKIRQLEHLDFGDPLTGKEDVEKQLKLVGKDQAGRIVKQDLDQSFSKNAGNVDLDSAISIDSSSSIYRMASWKKLPSAAEKNRKDTDSIDTTPSKDKLGLLHVHEAKPGSNNQLDTPSSHIEHLEAPPKEQKVSWGIWGYHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSSDTSCGNFDTVKVTTSSMQEEIFELSSKGISLSCRNSEDLLDSLPVTGNSSFMESQDIFPDPSYNRPFIFTPDHSTKSMSGGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLEIVRSIANVNNSDYGALECMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSNGLVDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKGLVHGDSKIRLDGHGDSLTLTDFGLSKIGLINSTDDFSGPSISGTASLGDNVPTSQSLSKREQRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGVPPFNAESPQVEYAIVGRVLVVVWVVGSVRGIVGVLGLSWEARVIIPLQQIFDNIINRDIPWPKVPEEMSYEAHDLIDKLLAENSVQRLGATGAREVKQHPFFKDINWETLARQKAMFIPSAEPHDTSYFMSRYIWNPEGEDFNGGSDFDDHELTDTCSSSSFSNLQDEDDFEIVISSVLIAGMTLKQGDECGSLADFCTSALTVKYSFSNFSFKNLSQLASINYDFVVKSNQNSPDVSKPSIP 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28672732 28690727 + Maker00023041 Lcy12g1309 649372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1309 1281 FunFam probable serine/threonine protein kinase IREH1 792 881 - -
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 976 991 - -
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 976 996 - -
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 16 42 - -
Lcy12g1309 1281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1309 1281 SMART serkin_6 794 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1309 1281 ProSiteProfiles Protein kinase domain profile. 794 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 108 141 - -
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 109 134 - -
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 53 82 - -
Lcy12g1309 1281 PANTHER SERINE/THREONINE-PROTEIN KINASE 502 1253 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy12g1309 1281 Gene3D Phosphorylase Kinase; domain 1 792 877 - -
Lcy12g1309 1281 MobiDBLite consensus disorder prediction 1 88 - -
Lcy12g1309 1281 SUPERFAMILY Protein kinase-like (PK-like) 779 1165 IPR011009 -
Lcy12g1309 1281 Gene3D Transferase(Phosphotransferase) domain 1 878 1050 - -
Lcy12g1309 1281 Pfam Protein kinase domain 795 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1309 1281 CDD STKc_MAST_like 800 1145 - -
Lcy12g1309 1281 Gene3D Transferase(Phosphotransferase) domain 1 1086 1158 - -
Lcy12g1309 1281 FunFam Probable serine/threonine-protein kinase cot-1 877 1060 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1309 Lcy-Chr12:28672732 Lcy5g2608 Lcy-Chr5:48766447 1.10E-190 dispersed
Lcy5g2611 Lcy-Chr5:48803391 Lcy12g1309 Lcy-Chr12:28672732 8.92E-10 dispersed
Lcy5g2610 Lcy-Chr5:48793434 Lcy12g1309 Lcy-Chr12:28672732 1.61E-43 transposed
Lcy5g2612 Lcy-Chr5:48808769 Lcy12g1309 Lcy-Chr12:28672732 3.44E-36 transposed
Lcy1g2730 Lcy-Chr1:53616732 Lcy12g1309 Lcy-Chr12:28672732 2.35E-06 wgd
Lcy1g2134 Lcy-Chr1:29645105 Lcy12g1309 Lcy-Chr12:28672732 2.93E-41 wgd
Lcy1g2091 Lcy-Chr1:28152621 Lcy12g1309 Lcy-Chr12:28672732 9.45E-15 wgd
Lcy12g1309 Lcy-Chr12:28672732 Lcy5g1341 Lcy-Chr5:31986784 4.80E-36 wgd
Lcy12g1309 Lcy-Chr12:28672732 Lcy9g0888 Lcy-Chr9:29709833 1.61E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65521 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1309 K08789 - csv:101210442 1994.55