Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1352 ATGTTCTTCTGCAAAATGGCCCCTACTTCACTTGCTTCCCGCTTCCAACAATCCATCACCCCGACCGCGCTCCGATCCTACGCTGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCCGTTGTCGGATCATCCATGGCGTCCCGAAAGTTGATGTCGGGTGCTGCAGCGACAGACCCATTGAGTCTTCTGGTGGCCGCGGTCGTCAATGCCTTCGCTTTAGCATCGGCCGTTTACATCGCGGCCAACGTCTCTGGCGGACATGTCAACCCGGCAGTGACGTTCGGCATGGCCGTCGGTGGCCATGTCAGTGTTCCTACTGCTCTCTTCTACTGGTTCGCTCAAATGCTTGCCTCTGTCATGGCCTGCATTGTTCTAAGAGTCACCATTGTCGGACAGCGCGTCTCGAGCTATGCCATTGCTGAGGAGATGACCGGCTTTGGAGCGTCGGTAGTGGAAGGCATATTGACGTTTGCTCTAGTCTACACCGTTTTCGCTGCCAGCGACCCTAGAAGAGGTCCATGCAATGCGATCGGCGCCGTTATGATCGGGCTGATGGCCGGAGCCAATGTGCTGGCTGCCGGGCCGTTCTCCGGTGGGTCGGTGAACCCGGCATGCGCGTTCGGGTCGGCGATCGTTGCCGGAAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTCTAGCCGGAATTGTTCATGATAATGTGGTTTTTCCGGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGGGGTGTAA 783 56.32 MFFCKMAPTSLASRFQQSITPTALRSYAAEFISTFFYVFSVVGSSMASRKLMSGAAATDPLSLLVAAVVNAFALASAVYIAANVSGGHVNPAVTFGMAVGGHVSVPTALFYWFAQMLASVMACIVLRVTIVGQRVSSYAIAEEMTGFGASVVEGILTFALVYTVFAASDPRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVGV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30053485 30054532 - Maker00023006 Lcy12g1352 649415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1352 260 FunFam Probable aquaporin TIP5-1 9 250 - -
Lcy12g1352 260 Pfam Major intrinsic protein 21 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 SUPERFAMILY Aquaporin-like 18 246 IPR023271 -
Lcy12g1352 260 Gene3D Glycerol uptake facilitator protein. 10 251 IPR023271 -
Lcy12g1352 260 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1352 260 PANTHER AQUAPORIN-8 15 244 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lcy12g1352 260 ProSitePatterns MIP family signature. 88 96 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1352 Lcy-Chr12:30053485 Lcy12g1837 Lcy-Chr12:39486350 1.99E-68 dispersed
Lcy12g1352 Lcy-Chr12:30053485 Lcy3g2133 Lcy-Chr3:48287893 3.15E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1352 K09873 - csv:101214078 446.817