Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1380 ATGGCGCCTTCCTCCCCACTTCAATCTACAGTCGAGAACATCGAAACCAATTTCCAGCCGTTCTATGTTCTTCATAAAGCATCATCCCGGAAAAACTCGAGAAAATCAAATCAATGTGGAAAACCAAGGAAGAGAACTAAACTCTCTCCATCCGGTCCCAATGGAATCGAGACTCCTGAGACTGAAGAACGCGACGGGTCGCTTGAACACCTGCGAATGGAGGCTCTGGAGCTTGTATGGTCGAAAATGGAAACCACCATTAAGGATGTTTTGAGGGATACTAATGTCAAAGTTTTTGATGATATATGTCGCTGGGTTTATGAGTCCTTTGCTGCTATTCGATCTTCTGGGACACCTAGTTCGTCTTCAGCTACTCGGCCTTTCCCTACCTTAACTCGTGCTGATTGTAAAATATTGTTCACTGGGTTGGTTCTCACTAAAAATATGGAAGTTGTGGATGATTTACTGACATTTGAAGAGCTTGGCTTTCATTTAAAATCTCATGGATGCCATGTGGCAAGTATCTCTTCTCAAGAATTATCTGCCAAGAGTAGCGTAGGCGGCTGCATCAGAAGTTTATTGAGACAGTTGTTGAAGGTTACTGTTGATGCAGCTGAGATGTTCATCCTAGCATCATGGTACAGAGAACAAGGATACTATGAAAACCCAGTAGTTGTGATTATAGAAGACATTGAACGATGTTGTGGTTCAGTTTTATCTGATTTCATTATTATGTTGAGCGAATGGGTTGTCAAGATTCCAATTATTTTAATTATGGGAGTTGCTACAACAATTGATGCTCCTGTAAGCGTGCTTCGTTCAAATGCACTACAGCAGTTGTGCCCTAGCAAGTTCGTATTAGGATCACCGGCTGAGAGGATGGAAGCAGTTGTTGAGGCCGTTCTTCTAAGGCACTGTTGTATGTTCAGCATTGGTCACAAGGTTGCCGTCTTTCTGAGGAAGTACTTCTTAAATCAGGATGGCACTTTAACATCCTTTATAAGAGCCATGAAGATTGCGTGTGTCCAACACTTCTCCATGGAACCCTTGAGCTTTATGCTTGCGAGATTGCTTGTTGAAGAAGAGAATAAGGATGGGAATCATGGATTTTTCCTAGAACTTCTATCCAAGCAGGCTTCAGATCTTCTTTCATATTCAAGGTACCCATTAGCCGAAGGTACTGGTAATGATCTTGGTAATATATTGTCAGAATTAAAGAGATGGCGGAAGGGCTGGAGTGCCGTTGTCCTGTGTCTTTATCAAGTTGGAAAGTTTGGAAAAGTTCAATTGCTTGACTTACTTTGTGAGGCACTCGATCCACAACTTCTCAAACCAATAACTTCTGAAAATTCAAGTAGACTGCAGCAAGGAAAGGGGATATTGTTTTCAAGTAGTTGTGAGCTACAATATCAATTTTCATCACGCAAGGATGGGTATATTTATCAAGCAATTCGAAAAATGAGCTATCCCTTTATTCCCGTGCACCAAGGAATAACAGAATTTAGTTATGCAGCACATGACCCGAATTCTCTTGACCCGGATGAGAAGGATACGCCTGACCCGTCTACCTGCTGA 1575 42.03 MAPSSPLQSTVENIETNFQPFYVLHKASSRKNSRKSNQCGKPRKRTKLSPSGPNGIETPETEERDGSLEHLRMEALELVWSKMETTIKDVLRDTNVKVFDDICRWVYESFAAIRSSGTPSSSSATRPFPTLTRADCKILFTGLVLTKNMEVVDDLLTFEELGFHLKSHGCHVASISSQELSAKSSVGGCIRSLLRQLLKVTVDAAEMFILASWYREQGYYENPVVVIIEDIERCCGSVLSDFIIMLSEWVVKIPIILIMGVATTIDAPVSVLRSNALQQLCPSKFVLGSPAERMEAVVEAVLLRHCCMFSIGHKVAVFLRKYFLNQDGTLTSFIRAMKIACVQHFSMEPLSFMLARLLVEEENKDGNHGFFLELLSKQASDLLSYSRYPLAEGTGNDLGNILSELKRWRKGWSAVVLCLYQVGKFGKVQLLDLLCEALDPQLLKPITSENSSRLQQGKGILFSSSCELQYQFSSRKDGYIYQAIRKMSYPFIPVHQGITEFSYAAHDPNSLDPDEKDTPDPSTC 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30925098 30930198 + Maker00023052 Lcy12g1380 649443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1380 524 CDD Orc3 71 352 - -
Lcy12g1380 524 MobiDBLite consensus disorder prediction 28 42 - -
Lcy12g1380 524 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 53 353 IPR045667 -
Lcy12g1380 524 MobiDBLite consensus disorder prediction 26 67 - -
Lcy12g1380 524 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 15 450 IPR020795 GO:0003677(InterPro)|GO:0003688(PANTHER)|GO:0005656(PANTHER)|GO:0005664(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)|GO:0006270(PANTHER)|GO:0031261(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1380 K02605 - csv:101215291 842.032