Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1382 ATGGCTTCCTACAAAGCATTAGCCTATATTCTACTTGCCACCACGCTGATCGTCGTCGGGCCAACAGCGGCGCAGCTGAGCCCGACGTTCTACGACACCACATGCCCCAGTGTGTCCTCCATCGTAGAGGACGTAGTGAGACAAGCTCTCCAAACCGATGCCCGAGCAGGCGCCAAACTCATCCGTTTTCACTTCCACGATTGCTTTGTCAATGGGTGCGACGGGTCGGTTCTACTAGAAGATTCAGCTGCAGACGGTATAGACAGTGAGCAAAACGCACCGGGAAATGCTGGGATACAAGGCCAAGACATAGTCGCCAACATCAAAACTGCTGTTGAAAATGCTTGTCCAAACCTCGTCTCATGTGCTGACATCTTGGCCATTGCATCTAATGCGGCCGTTGTCTTGGCAGGAGGAAGGGGTTGGGAGGTTCAGTTGGGAAGAAGAGACAGCAGAGTAGCAAATAGATCTGGAGCTGCTAGTAACCTTCCAAGTCCTTTTGAGCCTCTTCAAAATCTTACTGTCAAGTTTGCTAATGTCGGTCTCGATTCCACTGATCTCGTTGCTTTATCTGGAGCGCACACCTTCGGACGTTCAAGGTGCTTGTTCTTCGTTGGGCGACTGAGAAACTTCAACGGAACGGGAATGCCCGACCCGACACTTGACCCAGTCTACAGAGACATCCTTATCGAGGCCTGCCCCGACAACGAGACTCGGGTCGATCTGGATCCGACAACTCCAGACCAATTCGACAACAACTACTTCAGCAATCTCCAAGGCAACCGTGGACTTCTGTCGAGCGACCAGGTGCTTTTCTCCACTCCCGGCGCTCCCACCATCGCCACTGTGAACAGCTTCGCCGCCAGCCCAGACGCGTTCTCCGATGGCTTTGGAGCCTCCATGATCAAGATGGGGAACATCAGCCCTTTGACCGGGACTGATGGCGAGATTCGCTTCACTTGCTCTCGAATTAATCCTCTGCCTGCTGTTGCTGATATGTAA 1002 52.79 MASYKALAYILLATTLIVVGPTAAQLSPTFYDTTCPSVSSIVEDVVRQALQTDARAGAKLIRFHFHDCFVNGCDGSVLLEDSAADGIDSEQNAPGNAGIQGQDIVANIKTAVENACPNLVSCADILAIASNAAVVLAGGRGWEVQLGRRDSRVANRSGAASNLPSPFEPLQNLTVKFANVGLDSTDLVALSGAHTFGRSRCLFFVGRLRNFNGTGMPDPTLDPVYRDILIEACPDNETRVDLDPTTPDQFDNNYFSNLQGNRGLLSSDQVLFSTPGAPTIATVNSFAASPDAFSDGFGASMIKMGNISPLTGTDGEIRFTCSRINPLPAVADM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30983940 30986903 - Maker00023047 Lcy12g1382 649445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1382 333 Gene3D - 30 325 - -
Lcy12g1382 333 FunFam Peroxidase 164 304 - -
Lcy12g1382 333 FunFam Peroxidase 29 175 - -
Lcy12g1382 333 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PANTHER PEROXIDASE 72-RELATED 16 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 Pfam Peroxidase 42 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lcy12g1382 333 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy12g1382 333 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1382 333 Gene3D Peroxidase, domain 2 164 304 - -
Lcy12g1382 333 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1382 Lcy-Chr12:30983940 Lcy8g2143 Lcy-Chr8:47581654 5.77E-153 dispersed
Lcy10g0302 Lcy-Chr10:5387420 Lcy12g1382 Lcy-Chr12:30983940 3.12E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1382 K00430 - csv:101215530 536.569