Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g1385 | ATGGCTCAAAAGCTCCATTTTTCAATCCTTTTCATTTCTCTGTCCATTTTATCATGGATCTCCGCATCGTTTTCAAGCAACTACAATGCCATAGATTTATGGTGCAGCCGAACCCCATATCCCGAAGTGTGCAAGCACTTCTTCAAGAACGGGAAGTTTGACCCAAAAAAGCTGTCAGAGTTCAAGAAATCGGCGCTGAAAATCGCCATGGAAAGAGCTCTAACAGCCGAAACAGTGACAAAGCAACTGGGCCAAAAATGCCGAAGCCAGAAAGAGAAAGCCGCATGGGCCGACTGTCTGGAGCTCTACCAGAACACAATCCTCCAACTCAACAGAACCTTCTCCAACAGGTGCTCCGATTTCGACATCCAAACGTGGCTCAGCTCGGCGTTGACTAACCTCGAGACGTGCCGTGCTGGGTTCGTTGACCTGAACGTGAAGGACTACGACGCCGTTTTCCCCATTCTGGCAAGGAACAACGTGACGAAGCTCATCAGCAACAGTTTGGCGATGAATAACTGCACGGAGACGGAGTCGGGATACAGTGGCGGGTTTCCCAAGTGGGTTCGGGCGGGTGACCGGCGGCTGCTGCAGGCGGCGGCGCCCAAGGCGAACTTGGTGGTGGCGCAGGATGGGTCGGGGAATTTTAGGACGGTTCAGGCGGCGGTGGACGCGGCGGCGAAGAGGAGTGGGAGTGGGAGTGGGAGGTTTGTGATACATGTAAAGAGAGGGATTTACAAGGAGAATGTTGTGATTGGGAATAAAGTGAAGAATTTGATGCTTGTTGGGGATGGATTGAGGTATACTATTATTACTGGAAGTAGAAGTGTTGGTGGTGGTTCCACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGGGAACGTTTCATTGCCCGTGGCATCACATTCCGCAACACCGCTGGACCCCAAAACCACCAAGCGGTAGCCCTCCGGTCGGGCTCCGATCTCTCCGTCTTCTACCAGTGCGGCTTCGAGGGATATCAAGACACTCTCTACGTCCATTCGCAAAGACAATTCTACAGAGAATGCTACATTTACGGTACCGTCGATTTCATCTTCGGCAACGCCGCCGTGGTCTTCCAAAACTGTATGATCTACGCAAGAAAACCCATCCCCGGCCAGCAATGCGTCGTCACCGCCCAAGGCCGGACCGACCCGAACCAGAACACCGGGATCTCGATCCACAACTCGAGAGTGATGGCCGCGGCCGACCTCAAGCCGGTGCTAAGCTCGGTGAGGACCTACTTGGGGAGGCCATGGAAGGAGTACTCTCGCACGGTTTACTTGCAAAGCTTCATGGATAGCTTGGTGAACCCTGCAGGATGGTTGGAATGGAGTGGGAATTTTGCACTGAATACATTGTATTATGGAGAGTACAAGAATTTTGGGCCTGGTTCTTCTACTGCAAGGAGAGTGAAATGGAAGGGTTATAGAGTCATAACAAGTGTCACAGAAGCATCAAAGTTTACTGTTGGGAATTTTATTGCTGGGAAGTCATGGCTGCCTGCCACTGGAGTGCCATTCAATGCTGGCCTTTGA | 1560 | 51.67 | MAQKLHFSILFISLSILSWISASFSSNYNAIDLWCSRTPYPEVCKHFFKNGKFDPKKLSEFKKSALKIAMERALTAETVTKQLGQKCRSQKEKAAWADCLELYQNTILQLNRTFSNRCSDFDIQTWLSSALTNLETCRAGFVDLNVKDYDAVFPILARNNVTKLISNSLAMNNCTETESGYSGGFPKWVRAGDRRLLQAAAPKANLVVAQDGSGNFRTVQAAVDAAAKRSGSGSGRFVIHVKRGIYKENVVIGNKVKNLMLVGDGLRYTIITGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPQNHQAVALRSGSDLSVFYQCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAAADLKPVLSSVRTYLGRPWKEYSRTVYLQSFMDSLVNPAGWLEWSGNFALNTLYYGEYKNFGPGSSTARRVKWKGYRVITSVTEASKFTVGNFIAGKSWLPATGVPFNAGL | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 31097205 | 31099364 | + | Maker00023081 | Lcy12g1385 | 649448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g1385 | 519 | ProSitePatterns | Pectinesterase signature 2. | 352 | 361 | IPR033131 | - | |
| Lcy12g1385 | 519 | SMART | PMEI_2 | 26 | 171 | IPR006501 | GO:0004857(InterPro) | |
| Lcy12g1385 | 519 | SUPERFAMILY | Pectin lyase-like | 200 | 518 | IPR011050 | - | |
| Lcy12g1385 | 519 | NCBIfam | pectinesterase inhibitor domain | 7 | 173 | IPR006501 | GO:0004857(InterPro) | |
| Lcy12g1385 | 519 | FunFam | Pectinesterase | 199 | 519 | - | - | |
| Lcy12g1385 | 519 | Pfam | Plant invertase/pectin methylesterase inhibitor | 30 | 171 | IPR006501 | GO:0004857(InterPro) | |
| Lcy12g1385 | 519 | CDD | PMEI-like_3 | 33 | 173 | - | - | |
| Lcy12g1385 | 519 | ProSitePatterns | Pectinesterase signature 1. | 233 | 252 | IPR018040 | - | |
| Lcy12g1385 | 519 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 26 | 174 | IPR035513 | - | |
| Lcy12g1385 | 519 | PANTHER | PECTINESTERASE | 6 | 510 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Lcy12g1385 | 519 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 29 | 174 | IPR035513 | - | |
| Lcy12g1385 | 519 | Pfam | Pectinesterase | 205 | 504 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Lcy12g1385 | 519 | Gene3D | - | 199 | 519 | IPR012334 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1878 | Lcy-Chr11:42510268 | Lcy12g1385 | Lcy-Chr12:31097205 | 2.15E-211 | dispersed | |
| Lcy12g1385 | Lcy-Chr12:31097205 | Lcy6g0260 | Lcy-Chr6:2261062 | 2.86E-263 | dispersed | |
| Lcy8g1122 | Lcy-Chr8:37453563 | Lcy12g1385 | Lcy-Chr12:31097205 | 3.49E-19 | dispersed | |
| Lcy10g1398 | Lcy-Chr10:37454797 | Lcy12g1385 | Lcy-Chr12:31097205 | 4.85E-168 | transposed | |
| Lcy10g2024 | Lcy-Chr10:44375649 | Lcy12g1385 | Lcy-Chr12:31097205 | 1.65E-53 | transposed | |
| Lcy12g1385 | Lcy-Chr12:31097205 | Lcy2g2224 | Lcy-Chr2:46148720 | 1.58E-125 | wgd | |
| Lcy12g1385 | Lcy-Chr12:31097205 | Lcy6g1632 | Lcy-Chr6:29758567 | 1.65E-79 | wgd | |
| Lcy12g1385 | Lcy-Chr12:31097205 | Lcy8g0180 | Lcy-Chr8:4250777 | 1.66E-91 | wgd | |
| Lcy12g1385 | Lcy-Chr12:31097205 | Lcy8g0358 | Lcy-Chr8:10990330 | 9.61E-112 | wgd | |
| Lcy12g1385 | Lcy-Chr12:31097205 | Lcy9g0428 | Lcy-Chr9:11987900 | 1.19E-22 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g1385 | K01051 | - | csv:101216005 | 850.506 |