Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1408 ATGATTTCCGTTGCCCCACCGTGCGACGGCCGGCAGCCCGAACTCTCCCCCAAAATCTCCTCTCCACCGCCGCCGACGACCCATGTTTTCCGATCGAAGTTACCAGATATTGCATTCCCCAATCATCTCCCTCTTCACAGCTACTGTTTTCAGAAGTTCTCTGAATTATCCGAGCACCCTTGTTTGATTGTCGGCTCCACTGGAAAATCCTATTCCTTCTCCGAAACCCATATGTTCTCGCGGAAGGCCGCCGCCACTTTCTCTAAACTCGGAATTGAGAAGGGCGATGTCATTATGATTCTCCTCCAAAACTCTGCAGAATTCGTTTTCTCTTTCATGGGTTCCTCCATGATCGGCGCCGTTGCCACCACCGCAAATCCGTATTACACGGCGGTGGAGATTTCCAAGCAGCTGAAGTCCTCCGGTGCCAAATTGGTCGTTACTTACTCACATTGCGTCGACAAGCTCCGAGAATCCGACGAGGATCTCACCATCGTCACTGTCGATGACCCGCCGGAGAACTGTCTGAGCTTTTCGATGATTTGTGACGCCGATGAAAACGACGTGCCTACGGTGGAGATTGACCAAAACGACGCCGTTTCGCTGCCGTTCTCCTCCGGCACGACCGGGCTCCCCAAGGGGGTGATTTTGACCCATAGGAGTATGGTATCGAGTGTGGCTCAACAGGTAGATGGAGAGAATCCGAACGTGTATTTGAGAAAGAACGACGTAGTTTTATGCGTGCTACCGATGTTCCACATATTCGCCTTGAGCAGCATTGTTTTGATTTCGATTAGGTCAGGGGCAACACTACTATTGATGGAGAAGTTCGAAATAGAAACATTGTTACGACTGATAGAGACACATCGGGTGACGGTGGCGACGGTGGTGCCACCGCTGGTGGTGGCGCTGGTGAAGAACCCCAAGGTAGCGGATTGCGACTTGAGCTCGATCAGAATGGTGTTTTCCGGTGCGGCGCCGCTCCGAAAGGAGCTGGAGGAGGCCCTCATGCAGAGGATACCTCAAGCAATTTTTGGTCAGGGATATGGGATGACAGAGGCGGGACCCGTGCTAAGCATGTGCTCGGCTTTTGCAAAGGAGCCACCAATGCCAACAAAGTCAGGATCTTGTGGTAGAGTGGTGAGAAACTCTGAGCTCAAAATCATTGACCCACAAACTGGTGCATCCCTTAGCTATAATCAACCCGGAGAGATTTGGGTTCGTGGTCCACAAATTATGAAAGGATATTTGAACGACACGGAGGCCACGTCATTGACCGTCGACGCGGACGGTTGGCTTCATACGGGTGACATTGGCTACATTGACGATGAAGAAGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGATTTCAGGTGGCACCAGCGGAGTTGGAGGCCCTTCTCGTAGACCATCCCTCTATTGTAGAGGCAGCTGTGGTCCCGTAA 1461 51.06 MISVAPPCDGRQPELSPKISSPPPPTTHVFRSKLPDIAFPNHLPLHSYCFQKFSELSEHPCLIVGSTGKSYSFSETHMFSRKAAATFSKLGIEKGDVIMILLQNSAEFVFSFMGSSMIGAVATTANPYYTAVEISKQLKSSGAKLVVTYSHCVDKLRESDEDLTIVTVDDPPENCLSFSMICDADENDVPTVEIDQNDAVSLPFSSGTTGLPKGVILTHRSMVSSVAQQVDGENPNVYLRKNDVVLCVLPMFHIFALSSIVLISIRSGATLLLMEKFEIETLLRLIETHRVTVATVVPPLVVALVKNPKVADCDLSSIRMVFSGAAPLRKELEEALMQRIPQAIFGQGYGMTEAGPVLSMCSAFAKEPPMPTKSGSCGRVVRNSELKIIDPQTGASLSYNQPGEIWVRGPQIMKGYLNDTEATSLTVDADGWLHTGDIGYIDDEEEIFIVDRVKEIIKFKGFQVAPAELEALLVDHPSIVEAAVVP 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31603043 31607061 - Maker00029496 Lcy12g1408 649471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1408 486 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 486 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Lcy12g1408 486 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 454 - -
Lcy12g1408 486 MobiDBLite consensus disorder prediction 1 27 - -
Lcy12g1408 486 SUPERFAMILY Acetyl-CoA synthetase-like 39 486 - -
Lcy12g1408 486 Pfam AMP-binding enzyme 58 417 IPR000873 -
Lcy12g1408 486 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Lcy12g1408 486 Gene3D - 25 453 IPR042099 -
Lcy12g1408 486 Gene3D - 454 486 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1408 Lcy-Chr12:31603043 Lcy8g0946 Lcy-Chr8:33605182 0 dispersed
Lcy12g1408 Lcy-Chr12:31603043 Lcy5g0839 Lcy-Chr5:13457090 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1408 K01904 - csv:101221344 783.482