Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1429 ATGGAACTCTCTACCCCTTTGTTACAGAGCACCCAGAGGACTAGACTACTCAGATTCCTCCGCCCGGCCGCCGTCGAAGATTCAGGCGGAGACGAGGTGGTCCGCTTTCTGGGTTCGATTCGGCACCGGAATTTGGTGCCGATGCTCGGATTTTACGCCGGCGGGAGGGGCGAGAGGCTTCTGGTTCATCCGTTTTACGGCAGAGGGAATTTGGCGGAGTTCATTAGAGTAGGAGAATCAGAATCAAAAAATTGGGAGATCATTTACAGAATCTCCCTCGGAATCGCAAAAGCCCTAGATCACCTTCACAACGAATTGCAAAAACCAGTACCGCACGGAAATCTCAAGTCCAAGAACATTCTTCTCGATCCAAATCTCCACCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGACAAATGCTCCAACTTTCTGCCGCCTCCGGCTACAAGCCGCCGGAGCTAGTCAACATGACCGACGCCGACGAACGGACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCCGCCAAAGAGCCGGCGAATCGAAATGCGATTGCTAGCGGCGGAGACGGCGGTGATTGCGCTGTTTCTGAGGAGCGGATTCTCCGATGCCTCGTTCAGATCGGCGAGGCTTGTTGTTCTTCTTCGCCGGATCTTCGGCCGGATTTCAAGGAAGTGATTTCGAAGATTGAAGAAATCGGAAGGATTGAGAAGGATTGA 750 53.73 MELSTPLLQSTQRTRLLRFLRPAAVEDSGGDEVVRFLGSIRHRNLVPMLGFYAGGRGERLLVHPFYGRGNLAEFIRVGESESKNWEIIYRISLGIAKALDHLHNELQKPVPHGNLKSKNILLDPNLHPHVSDFGLHLLLNAAATRQMLQLSAASGYKPPELVNMTDADERTDVYSYGKILLELLSAKEPANRNAIASGGDGGDCAVSEERILRCLVQIGEACCSSSPDLRPDFKEVISKIEEIGRIEKD 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32432512 32438032 + Maker00029192 Lcy12g1429 649492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1429 249 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1429 249 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 10 244 IPR052451 -
Lcy12g1429 249 SUPERFAMILY Protein kinase-like (PK-like) 34 241 IPR011009 -
Lcy12g1429 249 PIRSF ILK 29 249 - -
Lcy12g1429 249 Pfam Protein tyrosine and serine/threonine kinase 35 239 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1429 249 Gene3D Transferase(Phosphotransferase) domain 1 8 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1429 Lcy-Chr12:32432512 Lcy6g0303 Lcy-Chr6:2818578 4.73E-88 dispersed
Lcy12g1429 Lcy-Chr12:32432512 Lcy5g0069 Lcy-Chr5:797078 1.31E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65523 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1429 - - - 0.0