Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1430 ATGGCGGGGATGGGAGATGAAGCCAATGGAAATCTTATGGTGCTGCCTTCCCCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATCAATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAAATTGCGTATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAATTCAATACCTCTTTCACAAGTTCGTGATGATGTTGCTGCGGCTTATAGGAAAGAAATTGGGTGGCAGACGGGTGAAAAGCTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGCAGATGACGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCGCTTGCACCTAGATATTGTACAGTCTATGCTATATCAAAAGGAAAATTAGCTTCAATACGGCCACCTGATATGGAGACAAACGTGAGCATTGAAGATGATGCGAGTGAAGCAAGTTCTGGAAATAGCTACTCAAGCTATACTTCTAGCTCACTTACAGATAGCAGTTCGAGCTTAATTACATCCTACTCTCATTTTCCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTACAACAAAAAATAGCCCCATCATAGCCAACCATTCTAGACATCAATCCGTTGATATTGAGGAGCATGTGGATGGTGTACGTTCTTCTTCCTATGTTTCAGATTGCCCACAAACTTTGAGTCGGGCCTCTAGTTGTAAAAGCTTGCCAACAGATAACCAGTCCTGGGTTTCTGATGAAGCTTCATCCTCAGGTGCATTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGGAATGTATGCTATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGAGTCTGGATAAAAGGGGGTATCGTGTGGCCAAGGGAGGATTGGTAACCCAAGGATCGGTCCAGAATGAAGTTGAAGCTCCATTGCCAACTAGGTGGCTAATCCGGCTTCTGAACCATCTAAATAAACAACGATCAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTGGCTGCCAAAGAATTTGCGAGGGAAGAGAGGGCAAAGCATGAAGCATTGAGAAGAGAAGCAAAGTATGTAAAAGAACGTGCCGAAAGGGAGGGCGTCTATAAGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAACAATATCAACATTTTCAGTGGGAAGATATTGTGTCTGCCACATCATCTTTCTCTGATGATCTTAAGATTGGAATGGGAGCACATGGTAAAGTGTATAAGTGCAGTTTGCATCATACAACGGTAGCGGTGAAGGTTCTGCACACTAGAGATGGTCAGAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATCTACTACTACTCCTCGGTGCGTGTCCAGATAAGAACTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGCAATACAACTGCAATCCCATGGTATGAGAGATTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCATCGTGATCTTAAGCCAGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGTGATGTTGGTCTTTCTACAGTGTTTAATTCAGACCCTCTAATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCCGAGTATCAACGAACTGGATTAATCTCACCCAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTGGTGGAAACCGCCATTGATAACCACACTTTAATAAATATTCTAGATATAGAGGCTGGGCATTGGCCTGTCGAGGAGGCGTATGAACTGGCAAGATTAGGACTTCACTGTGCAGAGCTGCAACGTAAAGATAGGCCGAACTTAAAGGATCAGGTACTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCTCCAGGATGTGATGAACGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGGAGTGGCTTCAAAAGAACGATATCTCACCAATGACGAAGTTGCCGCTACCAGATAAGAATTTAATACCAAATTACAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAGCTAA 2574 42.89 MAGMGDEANGNLMVLPSPSPVVAVAISGKKNSKYIIRWSLEKFLPEGIINFKLLHIIPRITSVPTPNCVFKLYANVDAVGNSIPLSQVRDDVAAAYRKEIGWQTGEKLLPYKKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETNVSIEDDASEASSGNSYSSYTSSSLTDSSSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKNSPIIANHSRHQSVDIEEHVDGVRSSSYVSDCPQTLSRASSCKSLPTDNQSWVSDEASSSGAFNDYSSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKSLDKRGYRVAKGGLVTQGSVQNEVEAPLPTRWLIRLLNHLNKQRSEEARKLEEINNKEVAAKEFAREERAKHEALRREAKYVKERAEREGVYKKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSDDLKIGMGAHGKVYKCSLHHTTVAVKVLHTRDGQKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTTAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLINILDIEAGHWPVEEAYELARLGLHCAELQRKDRPNLKDQVLPLLLTLKKVADEARNSASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEEWLQKNDISPMTKLPLPDKNLIPNYSLLSAIVEWNSRKS 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32486702 32498582 - Maker00029240 Lcy12g1430 649493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1430 857 ProSiteProfiles U-box domain profile. 786 857 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g1430 857 Gene3D Transferase(Phosphotransferase) domain 1 577 786 - -
Lcy12g1430 857 Pfam U-box domain 787 856 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g1430 857 ProSitePatterns Protein kinases ATP-binding region signature. 510 531 IPR017441 GO:0005524(InterPro)
Lcy12g1430 857 SMART Ubox_2 790 852 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g1430 857 CDD RING-Ubox_WDSUB1-like 788 842 - -
Lcy12g1430 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 PANTHER OS02G0152300 PROTEIN 22 849 IPR051348 -
Lcy12g1430 857 CDD STK_N 21 185 - -
Lcy12g1430 857 Coils Coil 405 457 - -
Lcy12g1430 857 SMART serkin_6 504 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 ProSiteProfiles Protein kinase domain profile. 504 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 SUPERFAMILY Protein kinase-like (PK-like) 482 763 IPR011009 -
Lcy12g1430 857 Gene3D Phosphorylase Kinase; domain 1 473 576 - -
Lcy12g1430 857 SUPERFAMILY RING/U-box 775 855 - -
Lcy12g1430 857 Coils Coil 341 361 - -
Lcy12g1430 857 Pfam Protein tyrosine and serine/threonine kinase 509 760 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 857 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1430 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1430 Lcy-Chr12:32486702 Lcy4g2245 Lcy-Chr4:49020170 3.46E-133 dispersed
Lcy12g1430 Lcy-Chr12:32486702 Lcy4g1564 Lcy-Chr4:39530662 7.66E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65524 None None None None Lcy PK