Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1430 ATGGCGGGGATGGGAGATGAAGCCAATGGAAATCTTATGGTGCTGCCTTCCCCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATCAATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAAATTGCGTATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAATTCAATACCTCTTTCACAAGTTCGTGATGATGTTGCTGCGGCTTATAGGAAAGAAATTGGGTGGCAGACGGGTGAAAAGCTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGCAGATGACGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCGCTTGCACCTAGATATTGTACAGTCTATGCTATATCAAAAGGAAAATTAGCTTCAATACGGCCACCTGATATGGAGACAAACGTGAGCATTGAAGATGATGCGAGTGAAGCAAGTTCTGGAAATAGCTACTCAAGCTATACTTCTAGCTCACTTACAGATAGCAGTTCGAGCTTAATTACATCCTACTCTCATTTTCCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTACAACAAAAAATAGCCCCATCATAGCCAACCATTCTAGACATCAATCCGTTGATATTGAGGAGCATGTGGATGGTGTACGTTCTTCTTCCTATGTTTCAGATTGCCCACAAACTTTGAGTCGGGCCTCTAGTTGTAAAAGCTTGCCAACAGATAACCAGTCCTGGGTTTCTGATGAAGCTTCATCCTCAGGTGCATTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGGAATGTATGCTATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGAGTCTGGATAAAAGGGGGTATCGTGTGGCCAAGGGAGGATTGGTAACCCAAGGATCGGTCCAGAATGAAGTTGAAGCTCCATTGCCAACTAGGTGGCTAATCCGGCTTCTGAACCATCTAAATAAACAACGATCAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTGGCTGCCAAAGAATTTGCGAGGGAAGAGAGGGCAAAGCATGAAGCATTGAGAAGAGAAGCAAAGTATGTAAAAGAACGTGCCGAAAGGGAGGGCGTCTATAAGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAACAATATCAACATTTTCAGTGGGAAGATATTGTGTCTGCCACATCATCTTTCTCTGATGATCTTAAGATTGGAATGGGAGCACATGGTAAAGTGTATAAGTGCAGTTTGCATCATACAACGGTAGCGGTGAAGGTTCTGCACACTAGAGATGGTCAGAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATCTACTACTACTCCTCGGTGCGTGTCCAGATAAGAACTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGCAATACAACTGCAATCCCATGGTATGAGAGATTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCATCGTGATCTTAAGCCAGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGTGATGTTGGTCTTTCTACAGTGTTTAATTCAGACCCTCTAATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCCGAGTATCAACGAACTGGATTAATCTCACCCAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTGGTGGAAACCGCCATTGATAACCACACTTTAATAAATATTCTAGATATAGAGGCTGGGCATTGGCCTGTCGAGGAGGCGTATGAACTGGCAAGATTAGGACTTCACTGTGCAGAGCTGCAACGTAAAGATAGGCCGAACTTAAAGGATCAGGTACTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCTCCAGGATGTGATGAACGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGGAGTGGCTTCAAAAGAACGATATCTCACCAATGACGAAGTTGCCGCTACCAGATAAGAATTTAATACCAAATTACAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAGCTAA 2574 42.89 MAGMGDEANGNLMVLPSPSPVVAVAISGKKNSKYIIRWSLEKFLPEGIINFKLLHIIPRITSVPTPNCVFKLYANVDAVGNSIPLSQVRDDVAAAYRKEIGWQTGEKLLPYKKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETNVSIEDDASEASSGNSYSSYTSSSLTDSSSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKNSPIIANHSRHQSVDIEEHVDGVRSSSYVSDCPQTLSRASSCKSLPTDNQSWVSDEASSSGAFNDYSSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKSLDKRGYRVAKGGLVTQGSVQNEVEAPLPTRWLIRLLNHLNKQRSEEARKLEEINNKEVAAKEFAREERAKHEALRREAKYVKERAEREGVYKKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSDDLKIGMGAHGKVYKCSLHHTTVAVKVLHTRDGQKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTTAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLINILDIEAGHWPVEEAYELARLGLHCAELQRKDRPNLKDQVLPLLLTLKKVADEARNSASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEEWLQKNDISPMTKLPLPDKNLIPNYSLLSAIVEWNSRKS 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32486702 32498582 - Maker00029240 Lcy12g1430 649493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1430 857 ProSiteProfiles U-box domain profile. 786 857 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g1430 857 Gene3D Transferase(Phosphotransferase) domain 1 577 786 - -
Lcy12g1430 857 Pfam U-box domain 787 856 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g1430 857 ProSitePatterns Protein kinases ATP-binding region signature. 510 531 IPR017441 GO:0005524(InterPro)
Lcy12g1430 857 SMART Ubox_2 790 852 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g1430 857 CDD RING-Ubox_WDSUB1-like 788 842 - -
Lcy12g1430 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 PANTHER OS02G0152300 PROTEIN 22 849 IPR051348 -
Lcy12g1430 857 CDD STK_N 21 185 - -
Lcy12g1430 857 Coils Coil 405 457 - -
Lcy12g1430 857 SMART serkin_6 504 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 ProSiteProfiles Protein kinase domain profile. 504 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 SUPERFAMILY Protein kinase-like (PK-like) 482 763 IPR011009 -
Lcy12g1430 857 Gene3D Phosphorylase Kinase; domain 1 473 576 - -
Lcy12g1430 857 SUPERFAMILY RING/U-box 775 855 - -
Lcy12g1430 857 Coils Coil 341 361 - -
Lcy12g1430 857 Pfam Protein tyrosine and serine/threonine kinase 509 760 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1430 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 857 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1430 Lcy-Chr12:32486702 Lcy4g2245 Lcy-Chr4:49020170 3.46E-133 dispersed
Lcy12g1430 Lcy-Chr12:32486702 Lcy4g1564 Lcy-Chr4:39530662 7.66E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65524 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1430 - - - 0.0